| Id Trinity | TRINITY_DN44440_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_477990 |
| Sequence | AACTGAAGTCCAAAATCCAATCCATAACGAGTGACTCGGGAGACTCAGTGATGCAACTCAGCAGCAACCTGTTATCAATTAAACCGTCACCACCACCACC ACCGAGTCCAAAACCGTCATTATTCAAACCCATCTTCTGCTTTCCCAACTCGGCCGAGTCAAACTCACTCGAATTCGAGACCCTACAATGGAGTTCCATA TGCAACCAACTCTCTTCCTTCACCTCAACCTCCATGGCTTCTTCTACAGCACAAAATGCAACATTACCAATAGGCCGAACCCTCCACGAGAGTCAGAAGC TTCTCGATCAGACTTCTGCGGCAAGGTTAGTCGCTCACCCCATGGATTTCTCCGGAATCGATGATTTATCGGAGATTCTTGCTCTTGCTGCTTCCGGTCA ATTGCTAACGATCCGGGAACTTTGTACCGTTCGACGCACGCTTCGAGCTTCAAGGGAACTGTTCCAGAAGCTCAATGAATTGGCTTCCAACTATAGTCAT CCACAAAGGTATTGTGTTTTTCTTGACAAAGTTTGGAGCATAGATCATATGGTTTTGGATTCTCATGTCCCAATAAGGCTTTAAAAGAAAGTATATCTCA AAGGTAATGGACATACAGAGTGTGATACCCTAATTGCAACTGTTCTTTTGGGCATGATTGCTTCCATCCCAAATTCCAAGATAATGGATCAAAATCAATA ACTTTATCGATGCAATTTTTCCAATCAGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAAAGAAAGAGAAACATAGAAATTCTGG ATTCTTTGTTGAAGGAAGTATCATCTCAAATTTTTCAGGCAGGGGGCATTGACAGACCATTAATAACAAAGCGTCGGTCTAGAATGTGTGTGGGTATTAG GGCTTCCCATAGATATTTGCTTCCAGATGGTATAATTCTGAATGTTAGCAGTTCTGGAGCAACATACTTTATGGAACCCAAAGATGCTATAGATCTAAAC AACATGGAAGTTAGGCTTTCAAACTCTGAGAAGGCTGAAGAAAGAGCAATTTTAAGTTTGCTTGCATCTGAAATAGCAAATTCAGAACGGGAGATAAACT ATTTATTGGATAAAATCCTTGAGGTTGATCTTGCTTTTGCAAGAGCTGCATATGCTCAATGGATGAATGCAGTGTGCCCAATTTTCAGTTTAGGTAATTC TGAAGGCTGTGATTCTGTTGAAGAGGATGATGATTTAGCGGTAAATATTGGTGGTATGCGTCATCCATTACTTCTGGAGTCTTCTCTAGAAAAAATTCCA AAGAATGTTGCATTAAAATCCAGAAATGCCACTGAGTCGGGTAATGGAAATGGAGCAGTGGCTTCTAAAAATGTTTTTCAAGGCATACCAGACTTCCCTG TGCCTGTTGATTTTAAAATTAGACACGGAACCAGAGTGGTGGTGATCTCAGGTCCTAATACAGGAGGGAAAACTGCTTCCATGAAAACATTGGGCCTAGC ATCACTTATGTCAAAGGCTGGAATGCATTTGCCTGCCAAAAACCATCCAAAACTTCCTTGGTTTGATCTTATCCTGGCAGATATTGGAGATCACCAGTCC CTAGAACAAAATCTCTCAACCTTTAGTGGGCACATCTCACGTATCTGTAAGATTTTGGAAGTTGCCTCAAAACAATCACTTGTTCTAATTGATGAAATTG GCAGTGGAACTGATCCTTCAGAAGGTGTAGCTCTTTCTGCCAGTATCTTGCAATATCTTAAAGATCATGTTAACTTGGCCGTTGTGACTACTCATTATGC TGATCTAAGTAGAATGAAGGAAAAGGATACCCGTTTTGACAATGCAGCTATGGAATTTTCTCTTGAAACATTACAGCCAACCTATAGGGTCTTATGGGGA TGCACTGGTGATTCAAATGCATTGAGCATAGCACAGTCCATTGGATTTGATAGAAATATAATTCATCGTGCACAAGAATGGGTGGAGAAGTTAAAACCAG AGCAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGGGGAAAGAAACAGATTAAAGGCTCAGACTGAAAGGGCTGCATCCATTCATGTTGA AATTATGAACATATACTATGAGGTAAAATCTAGATGTTTAACTAGAAAGACATTCTTTGTTTCTTGACTCTAGTTTCTTTTCCTTGGTTGATATAGCATT ACAATCAAAGTTGTTACTTGTCATGCTCATCTGAGATTTGCACCCTTAATAAAAAAGGACTCCGTTAATTGACCACAATAGGGTAGACAGTGGTGAGGAT GTTGTATAGGTTTGTGAATTGATTAACACTTCATTTAGTTTTCCTTGTAACTTGTAATCTTTAGTAGATGTGACCAATAATAGGAGATGGCCAGCCAACA GCTGCTAATTTTTCAATATTTTTTGGGGAGTTACATCTAGAATATGATAATCTGATTGACTATATCCACAATTATAAAATAAGTACATAGATTCTTCCAT CAAAGAAGTTCATAATGCCTTTATTGCAAAAATTTGTCCAGCAAAAGAAATCTTGAGCATTTATCAGTAGACTTAAATTGGGTATCATCATATTTGGAGT TGTCCATTTCTTTGTTTTTTCTCCTCTTATTATTTTATTCTTTTAAAAAAAATATGAAGATCCAAGCGGAGGCAGAAGATCTTGATAGACGTGAGGTGGA ACTTATGGCAAAGGAAACCCAACAGGTCCAACAAGAGCTAGAAGATGCAAAATCTCAGATAGAAACCGTGATACAGGAGTTTGAAAAGCTACTCACAGTT TCTGGTCGCGATCAACTCAATTCACTTATTAGAGAATCCGAATCTGCAATTGCCTCCATTGTAAAAGCTCATACACCTGCTGTTAAATATCCCATTAATG AAGCTGATCAGGCTTCATATACTCCACAATTTGGAGAGCAAGTCCTTGTCAAGGGTTTGGGAGGGAAATTAGCCACAGTGTTAGAGTCGCCTGCAGATGA CGAGACAATCCTGGTACAGTATGGTAAAGTGAAAGCCCGTGTGAAGAAAAGTAGTATCAGAGCTATTCCATCTAGTGCAAAGAATGTTGTACCTAGTTCT TCTACACATCGGCAGGGGCAGAATCTGCAAAATAGAGAATACCGGGAAAATTTGGAGACTGAGCTTTCTTATGGTCCAGTGGTTCAGACATCTAAGAATA CGGTGGACCTACGCGGTATGCGAGTGGAAGAAGCATCTATCAACCTTGAGATGGCAATTAATGCAAGCCGGCCATATTCAGTTCTCTTCATCATACATGG GATGGGCACTGGTGCTATTAAGGAGCGTGCACTTGAGATTCTGAGAAATCATGCTCGTGTTACTAATTATGAACCAGAAAATCCAATGAATTATGGTTGT ACCATTGCTTATGTCAAGTGAACCATCATTTTCCTGGTGCAGTAAGCTATGCCATTGCAAGCTTGTGCCCTTTTTGTTGCTACTTTTTTACTTTTCCTGT TCCCTCATTACCTGATGAATACGTACACAAACTCATTTCAAACCCAGTTTGTAAGATTTAGTAGTTTTAATTTGATTTTTTCGTTGAAGTTCTAGTTTGC ATTTTATTCGTCCTTTATTTTGTTCATACATAGTATATGGAGAATTCTTCCACAGCTTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_137703; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_477990
| Blastp | Endonuclease MutS2 from Synechocystis with 36.41% of identity |
|---|---|
| Blastx | Endonuclease MutS2 from Synechocystis with 36.41% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (sll1772) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421911.1) |
| Pfam | MutS domain V (PF00488.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |