Ll_transcript_283585

• Id Trinity: TRINITY_DN44607_c0_g2_i1
• Name Transcript: Ll_transcript_283585
• Sequence: CTTTGATTATCCAACACTCATTGTCGCCGAAAATCAAAACCCTAAACCCTAATTTTCCACTGATAAAAACACCACCATCTATTATCTTCTTCCTACTCAT TCTAAAAAACTCTCATAAACCCTAATTCCTCTTTTCCCTTTTTTCCAACATGGTTTTTCCTCGAGGTGGTGGTGGTTCTGGTGGAGGGTTCAGGGGAAGA GGTGGTGGTGGTGGTGACAGAGGTAGAGGGAGAGGTTTTGGTGGTGGTAGAGGAGGAGGTAGAGGTGGTACTCCATTCAAAGCTAGAGGTGGTGGTAGAG GTGGTGGTAGAGGTGGCCGTGGAGGAGGAAGAGGTGGTGGAATGAAGGGAGGGAACAAAGTTGTAGTTGAACCTCATAGACATGAAGGTATTTTCATTGC TAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGATTACTGTTCAGAAGGAAGATGGATCAAAA GAAGAGTATAGAATTTGGAATCCATTTAGGTCCAAGTTGGCTGCTGCTATTCTTGGTGGAGTTGACAACATATGGATTAAACCTGGAGCTCGAGTCCTTT ACCTAGGAGCTGCTTCTGGAACGACTGTTTCTCATGTGTCTGACATTGTCGGCCCGACAGGTGTTGTTTATGCTGTTGAATTCTCTCATAGAAGTGGTCG TGACTTGGTCAATATGGCGAAGAAGCGTACAAATGTTATACCGATCATCGAAGATGCTAGACATCCGGCAAAGTATAGGATGTTAGTTGGCATTGTAGAT GTGATATTTTCTGATGTTGCTCAACCTGATCAGGTGTGGTGTTAAGTTATGACATTTATTTTAAAACGAAACTGCAACACCTTTGAAGGATGGTATTTGC CTCACATATCTTTTAAAATCATGCTAGTCTTCCATAACATTTTGTGCCTGAATATCTGTTTATTTAATATTCATGATTTTTTACTTTCAGTTTGGCTTGT TGAATTTCAACTTTTAAAATATTATTCTTTTGTTTCTCCTCAACTTTGCATTTTTCTGTATCTATTACTAATTTTTTTAATTTCAGTTGTCCTATTATGC TATTTGTTCTTGTCCAATTATTTTGTTTATGGTCATTTTTTATACACTACCAGCTCTTTCTGTTTATGCTCTTTCTGTATTTTGTTATCCAAACTCAATT TTTTTATCTTTTTCTTAGTTTTTGTCTATGTTATCCAAATCTATACTATGTAGCCTGTACACTATGCATATGATGTAATACTCTATGCATATGATGATTT ACTCGGATTCCCCTTCAAGACAGCTTGGATGATGTAGACCCGAGATTCTGATGCACATCAATTTTTGTTTTGCCATTATTTTATTTTCAAAAGTTACAAT ATTATTATGCAATAATCTTTTACTTGAAAAGTTGGTTTTTATGTGTTTTTACCAATGTTGTCAATTAGTACTGTTTTTCTCTCTTGTTAATATACTTAAA TCAAGTTTGTATATGCTTTGTTCATTTCATATGCTTTGCACCTTCACAACAAATCAATTGTATTGGAAGAAAATGTTTTCTTTAAGCTCCATCCAACCCA GGTTTAAACTCCATTAAGTTTGAGTATCTGTTTTGTTTGATATTTTTGGTGACTCTTGCAGGCTAGGATTTTAGGTCTGAATGCCTCATATTATCTCAAA TCTGGTGGCCATTTTGTTATTTCCATCAAGGTATGTTTATATTTTTAGGTGTATATGCCTTATTATGAAGTTAAAATGTCGAATATCAATGTTAGATGCG GCTTCAAACTTTGTTTCGGTACAAAAATATGCAATCAAATACTGTGTTGAAAATGTTATAGGCTAACTGCATAGACTCCACAGTCCCAGCTGAGACAGTG TTTGCAAGTGAAGTCAACAAGCTCAAGGCCGATCAATTCAAGCCTTTCGAGCAAGTCACCCTTGAACCGTTTGAGCGTGACCATGCTTGTGTGGTTGGTG GATACAGAGTGCCGAAGAAGAAAAAAGATGCCGAGTAAAGTGCAGTTTAGAGACTACATGTACTACCTATGATTTTCTTAGATTAAATTTGCTGTTGTTT ATGGTGGTGGTATCTCCTAAGCATGTGCTTCCAGTATCTTTTATTGTGCGAATTCTGAGTTCTTGAATGCCATTAGTTGGTTATATGGTTTTACAATTGA TTCTTGAAAAACTAGGATTCTATTTTGATAGTTTTGCTTGTCTTAAGCAAAATTCTATATTCTGTTGCAGAAAAGGGGTAGTTTAACTTGTATTATTGTA GAGTGAGAAATGATAATCATATGAGCTCTTGAATGGAAAAGTTGGTAAGATGCCAAAGTTTTTTTAATCTCATTATGTCATGAGGTCCTAATATTTTGGT TGTAGTGATTGATGTATCTATTATCTGTACTAAACATGAGCTTGAAAAATGAAAATTAAATTCGGGTAAAATTTGAAACTGATTTCAAAA
• Tissue: pods
• Gene name: LI_gene_137991;
• Additional information: details;

Expression of Ll_transcript_283585

FPKM

• PAB: 0
• PNAB: 1.7
• PS1: 0.7
• PS2: 1
• PS3: 0.8
• PW1: 0.5
• PW2: 0.6
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_283585

• Blastp: Mediator of RNA polymerase II transcription subunit 36a from Arabidopsis with 91.46% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 36a from Arabidopsis with 91.25% of identity
• Eggnog: Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (By similarity)(COG1889)
• Kegg: Link to kegg annotations (AT4G25630)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019448854.1)
• Pfam: Fibrillarin (PF01269.16)
• Rfam: snoR60 (RF00339)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;