| Id Trinity | TRINITY_DN44607_c0_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_283587 |
| Sequence | CTTTGATTATCCAACACTCATTGTCGCCGAAAATCAAAACCCTAAACCCTAATTTTCCACTGATAAAAACACCACCATCTATTATCTTCTTCCTACTCAT TCTAAAAAACTCTCATAAACCCTAATTCCTCTTTTCCCTTTTTTCCAACATGGTTTTTCCTCGAGGTGGTGGTGGTTCTGGTGGAGGGTTCAGGGGAAGA GGTGGTGGTGGTGGTGACAGAGGTAGAGGGAGAGGTTTTGGTGGTGGTAGAGGAGGAGGTAGAGGTGGTACTCCATTCAAAGCTAGAGGTGGTGGTAGAG GTGGTGGTAGAGGTGGCCGTGGAGGAGGAAGAGGTGGTGGAATGAAGGGAGGGAACAAAGTTGTAGTTGAACCTCATAGACATGAAGGTATTTTCATTGC TAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGATTACTGTTCAGAAGGAAGATGGATCAAAA GAAGAGTATAGAATTTGGAATCCATTTAGGTCCAAGTTGGCTGCTGCTATTCTTGGTGGAGTTGACAACATATGGATTAAACCTGGAGCTCGAGTCCTTT ACCTAGGAGCTGCTTCTGGAACGACTGTTTCTCATGTGTCTGACATTGTCGGCCCGACAGGTGTTGTTTATGCTGTTGAATTCTCTCATAGAAGTGGTCG TGACTTGGTCAATATGGCGAAGAAGCGTACAAATGTTATACCGATCATCGAAGATGCTAGACATCCGGCAAAGTATAGGATGTTAGTTGGCATTGTAGAT GTGATATTTTCTGATGTTGCTCAACCTGATCAGGCTAGGATTTTAGGTCTGAATGCCTCATATTATCTCAAATCTGGTGGCCATTTTGTTATTTCCATCA AGGCTAACTGCATAGACTCCACAGTCCCAGCTGAGACAGTGTTTGCAAGTGAAGTCAACAAGCTCAAGGCCGATCAATTCAAGCCTTTCGAGCAAGTCAC CCTTGAACCGTTTGAGCGTGACCATGCTTGTGTGGTTGGTGGATACAGAGTGCCGAAGAAGAAAAAAGATGCCGAGTAAAGTGCAGTTTAGAGACTACAT GTACTACCTATGATTTTCTTAGATTAAATTTGCTGTTGTTTATGGTGGTGGTATCTCCTAAGCATGTGCTTCCAGTATCTTTTATTGTGCGAATTCTGAG TTCTTGAATGCCATTAGTTGGTTATATGGTTTTACAATTGATTCTTGAAAAACTAGGATTCTATTTTGATAGTTTTGCTTGTCTTAAGCAAAATTCTATA TTCTGTTGCAGAAAAGGGGTAGTTTAACTTGTATTATTGTAGAGTGAGAAATGATAATCATATGAGCTCTTGAATGGAAAAGTTGGTAAGATGCCAAAGT TTTTTTAATCTCATTATGTCATGAGGTCCTAATATTTTGGTTGTAGTGATTGATGTATCTATTATCTGTACTAAACATGAGCTTGAAAAATGAAAATTAA ATTCGGGTAAAATTTGAAACTGATTTCAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_137991; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_283587
| Blastp | Mediator of RNA polymerase II transcription subunit 36a from Arabidopsis with 88.93% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 36a from Arabidopsis with 88.75% of identity |
| Eggnog | Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (By similarity)(COG1889) |
| Kegg | Link to kegg annotations (AT4G25630) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448854.1) |
| Pfam | Fibrillarin (PF01269.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |