Id Trinity | TRINITY_DN44654_c1_g1_i3 |
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Name Transcript | Ll_transcript_283775 |
Sequence | TAATCAGTAAACTTGATTTACTTGTGACATGTCATTTTTTATGGTAATTTTCAGGAAAATTTAGTAGGAAAATATATCTGGTACAAAAATAGGATATTAT TAGCTTAAAATAAAATCCATAGGTAGAATTGATTTACTCTTTAGCTGAAATAAGGAAAGACACAAAAAATACACTCTTGAATAGAATTTTGTCTGGAAAC TAGAAAGATGACAGCATTTGAAACTTGCACGCAAACTTCTGAGATTTAACAATCGTGTTCTGTTCACTCATTACATTTCTTCTCAATTTCTCTCTATTTA CGACAATTACCACAAATTCTCCAAAAAAACTCATTTTGATGGCATTACCACACTCTACTTTAGCAACCATAGTAACACTTTCATCACCGACAACCAAATC TTTCAACCCTCTTCCCGTTTTATCCTTCACGAAGGAACCTTTTTTCACGAAACAAACCATACCCAGAAGAAAAAAAAGAAACTTTTCCCTAACCCCTTTA CGCGTCGCTGCGCCAACAACAACAATTGAATCAGATCAATCGTACACAGAATCTGAAAGGGGCGAGATTGATGATGAATTTGATGATGAAACCTCGTCCA CCAAGTTTTCATGGAGGGATCATTGGTACCCAGTTTCGTTAATTGAAGATCTGAACCCGAATTATCCCACACAGTTTCAGCTTCTGGGTCGTGAAATTGT GCTCTGGTACGATAAATTGAACTCAAGATGGGTTGCTTTAGATGACAAATGCCCCCACCGTCTTGCCCCTTTATCTGTAAGTGTAATCCTCTCTCTTTGT TCTTTCTTATAATATATTATGCTTTTTTTTATCATAGAAAGTTATTCTGATATGAGCTTTTAGGATACGCTGAATTTTTGGGCTTATTTTTCAGCTTCTC GTGTAAAAATGTTTTAGGATGATCACTTTTTTTAATTAGCTTTTAAGAGAAGAGAGTGGAAGGATTGATGAAGAGGAAAAGTTTTCTTCTGATAAAAAAA TGAGTATTTGGTTTTTGCAGGAAGGAAGAATTGATGAAGATGGAAACTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGAAGCTGTGTTAA GATCCCTCAGGCTATGTCTGAAGGTCCCGAAGCTCGTGCAGTTCGGTCTCCAAGAGCATGTGCTACTAGATTCCCTACCTTGGTTTCTCAGGGCTTGCTC TTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCTAATGCGTCCCAACCTCCATTGTAATTGTCTTAAACCAATTCTGATTAGTTTAATAAAATTATAT TTATATGTTCATAAATAAGCTTTGTTTAATTGAGCCACTTAAAATGTGTTTTTAGTTTTAGTTTTTTGTACTTTGTATAGGTTGCCTGATGATTTTGAAA AACCAGAGTTTGCTACAGTGAACATTCAGCGTGATCTGTTCTATGGCTATGACACTCTCATGGAGAATGTCTCTGACCCTTCTCACATTGATTTTGCTCA TCACAAGGTTCAAATAATACTCTCCAACTGACTTCTAGATGCAGGATATTAATTTTCTATCAGTTTGATAGTTGCTAGTATTTTATTTTGGCCCTGTTGT AAGTGAAATTTGTTGAATATAATAATGTTATGCTGATGCAATAAAAAGATTGTTGTTAGGGAGAATCTGTTGGTTAGTTCCATTTATTATATATCTTACT GAAACTGCCGCATGTTGTCGAAAACTTTGAAGTCAGAGTAATTGAGAAGCCCTTCTCATGGCCCATGGGTACAGGATATGGTAAACCTTGAATGTCAGTG TTATTTTTCTAACATTCATTTTATTCTGTTGTGATTTTTTGTAAGAAGTTAGTCAGTGTATTAGATCTTATACTTTTACCATATATATGTTTCTAATATA CAATTCTTGCAACCTAGCATTGTGCTTGTTTACATCATGCATTATGGTCCTGTAGTTTAGTGTTCCTTCATCATTTTGCTAATGGAATATTAGCAGTTTA TTTAGCTATTATGTATTATTAATTTTGACACTAACTAGAGTACTAGACATATGCTGTTGCTAAAGTTGGAATTATTTGGTACTGTTAGGTTGTTCAATAA TTCCCACCCACTAACATTAAAATGATCCATACTCTTCAGGTTACAGGAAGGAGAGACAGAGCGAAGCCTCTGACATTCAAGATGGATTCTCGTGGTCCAT GGGGCTTTGCAGGAGCTAATGATGGGAACCCAAAGATCAGTGCTAAATTTATTGCACCATGTTATTCTATGAACAAGTAAGCCAATGGCTTTTGGCCTTT TGCTTTGGAAGTAAATGTCACATGTATCTAGGTTTTGTTTTATATGAAAATTATTCAATGTCCGCATTTAATAATGAAAGAACTTTGTATGAAATTTGTA CATGTTTTTGTCTGTGTGTTTTTTCATCTTTAAGGGCAAAGTGTTGGGTATCATGCATTACATCAGAACTCATATGTATCTTGTGTCGCATACATTCGAA ATGAAAATGTAATAGTAGAGCATCAAAGCTTCCTGCATGTGGATGAATTCAGTATCACACAGTCAATTTCGATAGTTCACAGGAATCTTATATTTTTTTA CTTCTGTTAATTTCATTCTTTTTCACCCCTAAAGGACCACTGGGAAAGTAATTTTGGAAATGTGTAACTGTCTTTCTAATCAAACCGTAATATACCATCC AGTACTTAAGATGAGACATGTCTTGTTAAGTTATCTTCAGTTTCACTGTGTGACAGTGTGAGGTGCTTGAAAAGCATTCTCGGACCAGTTGTGTGATTTT ATGGATAATGCTTGAATCATCAATGTCAGTTTCAGTAGGTATATTGATACTAATATCTAGTTAATTCTGTGGGTGGCATATATGACAACCACATTCAAGA TGCATGTCAAATAACTACCACTTTAGGTTTGGATGCTATAGCTTTTCTTTTTCATTTGTTGCTACTGCAGCCAAATAAATTTGGCGTAATTATTATTGCA GAATCGAGATTGATACCAAGCTCCCAATAGTTGGAGACCAGAAATGGGTAATATGGATATGTTCATTCAATATCCCCATGGCACCTGGTAAGACGCGATC CATTGTCTGCAGTGCTCGAAACTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTGGTTCCGAGATGGTATGAACATTGGACTTCAAACAAG GTATATGATGGAGATATGATTGTTCTTCAAGGTCAAGAGAAAATATTTCTAACAGCAACTAAAGAGGGTGGTGACATTAATAAGCAGTACACAAACATCA CCTTCACACCAACACAAGCCGATCGCTTTGTCCTCGCATTTCGTAATTGGCTGAGACGACATGGCAACAGCCAACCAGAATGGTTCGGGACAGTCGATCA GCAGCAGTTGCCATCAACAGTTTTATCGAAACGTCAGATGATGGATAGATTTGAACAG BLAST |
Tissue | pods |
Gene name | LI_gene_138081; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_283775
Blastp | Pheophorbide a oxygenase, chloroplastic from Arabidopsis with 82.31% of identity |
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Blastx | Pheophorbide a oxygenase, chloroplastic from Arabidopsis with 82.69% of identity |
Eggnog | rieske 2fe-2S domain-containing protein(COG4638) |
Kegg | Link to kegg annotations (AT3G44880) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019413798.1) |
Pfam | Pheophorbide a oxygenase (PF08417.11) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |