| Id Trinity | TRINITY_DN44679_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_283541 |
| Sequence | AGCAAGCCCATCTGTTTGGGAAAGGTTAATGGAAGTTACTAGTTGGAGAAGAGAAATAGGTTCTAATTTAGAGTTTAGAGAAAGAATGGAATTCGAGAAG AGAAAAGCAGCGAGCATAGCTTCACTAAGGTCAATAGAATCAGACAAATCAGCGAAAGGGTCATTAGACACACCAATTATTCCTCTCATTAATACTATTA ACCATAACCCTCTTTACTTCACCACCAGCTCCTGCTCTGGCAGAATCTCAGTCCTCTCTCAACCCCTCTCTACTCTCTCTTCCAACCCTAAGAAGAAGGC ACGTGGTGGCACGTGGCTATTCGTCTCACACCACCCCGCTGAACCGGACTCGCTCCTCTCCCTTCTATTCCCCTCCCCCGACTCAACTCGCCTTTCTGAG TCCGAACTCGTTTTCAGATTCGAGCCTCTCATTGTTGCTGTTGAGTGCAAAGACCTCGCTTCGGCTCAGTCCCTTGTTTCTTTAGCCATTTCTTGCGGTT TCAGAGAGTCTGGGATTACTAATACTAACAAGCGTTTCATTATAGCCATTCGATGTTCGATAAGGATGGAGGTACCCTTAGGTGATACTCCCAATATTAT GGTTACGCCTGAGTATGTCACTTTTCTTGTTCGACTTGCCAATCACAAAATGGAAGCTAATCGTAACAGAACTGATAGGTTCCATCAAATGTTGGTGTCG TTGTCACAATCTAATGATAACACTAATCATTTATCACCAAATCATCATGCAATAGGGATTCTACATCACCATTCTGAAGTTGAGGATGATTCTCAGCACA ACGGAGACAATTATTCAGGGTCAACTGTGGGGTTTTCTGGTTCTAGTCTTCCAATTGCCCATATCGAAATTGTTGGTGAACCAGTCGAGAAACTTTTCCT TTGGGGCCATTCAGCTTGTGCATTGAATAATGGCAAACACAAGAAAGTTGTTGCATTTGGTGGCTTTGGAGGCATGGGGAGACATGCCAGGAGAAATGAT TTGTTGCTACTGGATCCATATTCTGGCAATCTGGAAACAGTCAGCAGTTTTGGTGAAGTAGCTCCATCTCCATGCTTAGGCCATACGGCTTCCTTGGTTG GAGATCACATGTTTGTGATTGGAGGTCGGACTGGTCCTGATAAAATTTTGAATGATGTATGGGTCCTTGATACCACCAACAATTGTTGGAAGTTACTTCA ATGTGGTGGCAGTGTCTTTCCTCCCAGGTAATGCTTGATAGCATTCTTCTGTTTTGGATTTTGCCAGTTTAAATGAAATCCACTTGTCAAGCAACTGCTC ATTAGAGGAAAGAAAAACTTTATATAGAATTTCAAGACAGTTTTCTATATTGTATGAGTTTTGGTAGCAGTATCTATATTCATGTGCATAACTGCTTATG ACTTATTAAAATGTATATTGTATCTATTATAAAGTGCAGTAAGCATCGTTTACTGTAGCTTGATTTGGTAATACTCTTTTCAGTGTTGTTTAATATAAAT TTTTACTTTAATTTTAACATGTCCCCCACCTTTTGAGGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_138140; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_283541
| Blastp | tRNA wybutosine-synthesizing protein 2/3/4 from Arabidopsis with 57.36% of identity |
|---|---|
| Blastx | tRNA wybutosine-synthesizing protein 2/3/4 from Arabidopsis with 55.67% of identity |
| Eggnog | tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)(COG1590) |
| Kegg | Link to kegg annotations (AT4G04670) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462817.1) |
| Pfam | Methyltransferase TYW3 (PF02676.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |