Ll_transcript_283543

• Id Trinity: TRINITY_DN44679_c0_g1_i4
• Name Transcript: Ll_transcript_283543
• Sequence: AGCAAGCCCATCTGTTTGGGAAAGGTTAATGGAAGTTACTAGTTGGAGAAGAGAAATAGGTTCTAATTTAGAGTTTAGAGAAAGAATGGAATTCGAGAAG AGAAAAGCAGCGAGCATAGCTTCACTAAGGTCAATAGAATCAGACAAATCAGCGAAAGGGTCATTAGACACACCAATTATTCCTCTCATTAATACTATTA ACCATAACCCTCTTTACTTCACCACCAGCTCCTGCTCTGGCAGAATCTCAGTCCTCTCTCAACCCCTCTCTACTCTCTCTTCCAACCCTAAGAAGAAGGC ACGTGGTGGCACGTGGCTATTCGTCTCACACCACCCCGCTGAACCGGACTCGCTCCTCTCCCTTCTATTCCCCTCCCCCGACTCAACTCGCCTTTCTGAG TCCGAACTCGTTTTCAGATTCGAGCCTCTCATTGTTGCTGTTGAGTGCAAAGACCTCGCTTCGGCTCAGTCCCTTGTTTCTTTAGCCATTTCTTGCGGTT TCAGAGAGTCTGGGATTACTAATACTAACAAGCGTTTCATTATAGCCATTCGATGTTCGATAAGGATGGAGGTACCCTTAGGTGATACTCCCAATATTAT GGTTACGCCTGAGTATGTCACTTTTCTTGTTCGACTTGCCAATCACAAAATGGAAGCTAATCGTAACAGAACTGATAGGTTCCATCAAATGTTGGTGTCG TTGTCACAATCTAATGATAACACTAATCATTTATCACCAAATCATCATGCAATAGGGATTCTACATCACCATTCTGAAGTTGAGGATGATTCTCAGCACA ACGGAGACAATTATTCAGGACAACTTTCCTTTTAATATCAATCAAAAGTCTGAATCTTTCAATGGTTGGCTGGCAGGGTCAACTGTGGGGTTTTCTGGTT CTAGTCTTCCAATTGCCCATATCGAAATTGTTGGTGAACCAGTCGAGAAACTTTTCCTTTGGGGCCATTCAGCTTGTGCATTGAATAATGGCAAACACAA GAAAGTTGTTGCATTTGGTGGCTTTGGAGGCATGGGGAGACATGCCAGGAGAAATGATTTGTTGCTACTGGATCCATATTCTGGCAATCTGGAAACAGTC AGCAGTTTTGGTGAAGTAGCTCCATCTCCATGCTTAGGCCATACGGCTTCCTTGGTTGGAGATCACATGTTTGTGATTGGAGGTCGGACTGGTCCTGATA AAATTTTGAATGATGTATGGGTCCTTGATACCACCAACAATTGTTGGAAGTTACTTCAATGTGGTGGCAGTGTCTTTCCTCCCAGGCATCGTCATGCTGC AGCTGTCATGGGTTCAAACATTTACGTATTTGGGGGACTAGACAATGATACTATATTTTCCTCCCTTTATATTCTTGACACAATTAGTTTACACTGGAAA GAACTACCAGTTTCGGGGGACTGGCCATGTGCCCGCCACTCTCATGCAATGGTTGCATCTGATTCTCACATTTTTATGTTTGGCGGATACAATGGTGAGA AAGCACTTGGAGATTTGTATTCCTTTGATGTTCAGAAGGGTCAATGGCAGAAGGAAAAGACAGCTGGAAGTAACCCGCATGCTAGGTTCTCCCACTCAAT TTTTGTTTATAAAAATTATCTTGGAGTTCTTGGTGGTTGTCCAATCAGACAACATTGTCAAGAGTTGTCTTTACTTGATTTGAAGCTTCATCTATGGAAG CATATTACCCTTACTTCTATAGGTAAAGATTTATTTGTACGAAGTACAGCCATTGTTATTGGAGATGATGTTGTTATAGTTGGTGGTGGTGCATCATGCT ATGCATTTGGAACCAAGTTCAGTGAGCCAGCTAAACTCAGCTTGCTTCATTTAATGCATTCCTCACATGATGATCTTATGCCTGTCAAAAATCCAAGAAA GCTTATGTTTGGCCAAAATGATGGGACGAACCAGAATAAGATTGAAAGTTCTTTGGGATCCCAACTGGAACATGCGCCAAATATATCTGAAGATGAAACT TTATCTTCAAACGATGGCTTACCTTGCATGAATGATCAAAATCAGATGATTCTGCCACATTATATTCTGCAACTAGAAAAGAAATATGCAAAATTAGGGA AGGATATGTTGAAGAAATTTGGATGGTTAGACTTAGGGAGAAAGGTGTACTGTGAAGAGGGTGGAGTACATATCTGTTTTCCTGTAATTAAAGATTTTGT TTCTTTATTTCATGAAAGGAATCACCACTTAGAAGATGTGATTGATGGAAAAAATGGAGCCCCCTTTTCAAAACCACTTAAAGGAGATGGTAAGTCGTTA CATGAGATATCCTGTTCCGAAGCATTGAGTCTACTCCATGGATATGGTGCCATTTTGCTGGAAGATGAGATTGTTGAAGTAAGAAAAACTGCAAAGTCTC CTTTGAAAGTGATGATCGAAGCGGTAACGTCTTTGATTGAGCATAAAGGTCTACCAGCACAGCTTCTGGATGAACTGCCAACAAGGTGGGATCGACTTGG AGATATTGTTATACTTCCAGCTACTTCTTTCAAGGATTCCATGTGGGATTCTATCACTGAAGAGCTTTGGACCATTGTTGCCAAATCACTTAAGGCTCAT CGTCTCGCCCGCCAAGGCCCAGTTGCTGCAACTGGTACAAGAGATAGCACATTGCAGATTCTTGTCGGAGATAATGGCTGGGTCAACCATCGAGAAAACG GAATACTCTATTCTTTTGATTCTACGAAGTGCATGTTCTCATGGGGTAATCTTTCTGAGAAGCTGCGGATGGCCAAGCTGGATTGTAAGGATGAAGTTAT AGTAGATCTGTTTGCAGGCATTGGCTACTTTGTGCTGCCTTTTCTTGTCAGGGCCCAGGCAAAACTTGTATATGCTTGTGAGTGGAATCCCCATGCTTTA GAAGCTCTCCAACATAATCTGCAAGCAAATTCTGTGGCTGATCGTTGTATCTTACTTGAAGGAGATAATCGAATTATGGCTCCCAAGAATGTGGCTGATA GAGTCTGTCTGGGTCTCATTCCATCTAGTGAGAGTAGCTGGGTCACAGCTGTGAGGGCTTTAAGGATAGAGGGTGGAATATTACATGTCCATGGGAATAC AAAGGACTCTGAGGAGCCTGAATGGATTGATCATGTATCAAGTTCAATATATGAAATTGCTAAATCTGAAGGTTATTGTTGGGAGGTTTCTATAGAACAT GTTGAGAGGGTGAAATGGTATGCTCCTCATATTCGCCATGTTGTTGCTGATGTAAGATGCAGACACATCCAAAGATAGTGAAAAGAATGGCATTTGATGT TGTTAACAATAATGAATGTCATTAAGAACTTGTCAAGATCTTAAATGAGAGCTACCTTTGTACCATTGGCCAATTTAAATGCAGAGTTTGGATTTCAGAC GGTTCCGAGAATCGGATTCAATCATTGATGATGGAGAGGTGATGATGAACACTTCAATGGCAAACTTGTGTCTCAATCCAAATACTGCATACTACATTGT ATCTGGCGTGTTTTGTGCTATAATACAGTTTGATGTATAATGTTTTCCAATTTGGGGAGGGCTTGTGCACAGTGAATTTTATTACATGAAACATGTCAAA TTTTTGTTTGCTATTTATTTAGGCTGCAATTGAAGTCTATTTGATATGTGAGACAAAAAAGAAGAAATTGATGTGAAAACAATCATTTAACTTTTCTGAA TAACGATATTGTAGTGAATTT
• Tissue: pods
• Gene name: LI_gene_138140;
• Additional information: details;

Expression of Ll_transcript_283543

FPKM

• PAB: 0.3
• PNAB: 0.8
• PS1: 0.5
• PS2: 1.2
• PS3: 0.5
• PW1: 0.1
• PW2: 1
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_283543

• Blastp: tRNA wybutosine-synthesizing protein 2/3/4 from Arabidopsis with 58.84% of identity
• Blastx: tRNA wybutosine-synthesizing protein 2/3/4 from Arabidopsis with 58.96% of identity
• Eggnog: tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)(COG1590)
• Kegg: Link to kegg annotations (AT4G04670)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462817.1)
• Pfam: Kelch motif (PF13854.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;