| Id Trinity | TRINITY_DN44735_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_335297 |
| Sequence | CTCCATCTTTCTATGGAAGTTAATAAAATATAATCTTGTAATAAAAATGAACGTGAATGTTTAAAATTAAATTATTATTTTATGAAAAGTAAAATGTAAA GACATGAATTGAAAAAAAGGGTGTGGACAGAAAAGGAGAAATCTCGGAGCGGAGGAAAGAGAGAGAACGATGCCGGTCGCGAGGCGAGAGACGTCAGATT GTAGAGTCATCGGTCATGTAGATATGGACTGCTTCTACGTTCAAGTGGAACAGAGAAAGGAACCAAAACTAAGGGGTGTACCCACTGCAGTAGTACAGTA CAACTCATACAAAGGTGGTGGCTTGATTGCAGTTAGCTACGAGGCTCGTGCACATGGTGTTAAGCGCTCAATGCGGGGCGATGAAGCAAAGGAGGCATGC CCACAAATTCAACTCGTCCAAGTTCCGGTTGCACGCGGTAAAGCTGATCTCAATACATACAGGAGTGCAGGTTCAGAGGTTGTTTCTATTCTTTCACGGA AGGGTCGTTGTGAGAGGGCTTCAATTGATGAGGTGTATCTTGACCTTACTGATGCTGCTGAAGCAATGTTTATGGAAACTCCTCCAGAAAGCATGGAAGA TATTCAGGAGGAGGTTACCAAGTCTCATGTTTTGGGGCTTCAATTTGAGGATGGAAATGACCCCAAAGAAGAAGTTAGAAAGTGGCTTTGTAGGAGTGAT GCTAGTTATCAAGACAAGCTATTAGCTTGTGCTGCTTTCATTATTGCTGACCTCAGGATGCAGGTGTTGAAAGAGACGGAATTCACATGTTCTGCTGGCA TTGCTCATAATAAGATGCTGGCTAAACTTGCTAGTGCTATGAACAAACCTGCACAACAAACTGTTGTGCCACACTCATCTGTTGCAGGTTTGCTTGAGTC TTTGCCAATAAAGAAAATGAAACAGCTTGGGGGAAAATTGGGAAGTTCCTTACAAAGTGATCTTGGTGTGAATACTGTTGGTGATCTGCTTCAGTTTTCA GAAGAGAAGCTACAACAACGTTATGGGATCAATACCGGTACTTGGTTGTGGAATATTGCGAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTC CCAAGAGTCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGACTTTGAAGACAATTGGTTCTGTTCAGCATTGGATAAATGAACTGTGTGAAGAGCTGAG TGAACGCCTTCATTCTGACTTAGAGCAAAACAAACGGATTGCACACACACTCACTCTCCATGCTAGAGCATATAAGACGGGCGTTCCAAATTCAAATAGA AAGTTCCCTTCTAAATCATGTCCTCTAAGATATGGGACTATAAAGATTCAAGAGGATGCTTTAACTCTATTTCAAGCTGCATTACGTGAATTTATGGGCT TTTATAACAGTAAGACTAATTGGAACGAAAATAACAAGTGGGGGATAACGTCACTTTCTGTTTCTGCAAGTAAGATTGTCCCCATACCATCTGGGACGCA TTCTATTGTTAAATACTTTGGTGGGCAAACTCCATCTGGTTCTTCATTGAATCAGCCACTAGATAATGTCATCGATGAAGCTGTGCCACCGTCATCTTCA GGTACCGAAAATTGTTTGGGATTGATTCTCTGTGAATTACCAGTCAGATATCCTGAAGAAGACACAGCAATGAAGCATTCACAGGATTGTGTGGATCAAC AGGATCCATTGTGCAATTTGTCCTCGAAAGTAGATGGCTTGACTGAAGAATCCTCACTCATCTCACCTACAGGAAGTGAAGACCGGAGAAAACAGAGTGA AGAACATAGAGATTTGCCTGCAAAAAAACCTAGGGTTGTTTTAAATACATCCAGTCTTAAAGCAGTTGAGAAGAGAAAGAGAGAAGGAAAGAAGCTTCAA GGGAATTGTTCAATTACAAAATTCTTCAATAATTATCCAAACTCTCAGTCTTCATTGGAGCAAAAGAATGTTACAAATGCTCAAGGTACTAAAATATCAT CATCACTTAGTAATTTTTTATTCCATTTCCTTTCATTATACTTGTGCAATCCCATCTCTGTTATTCCTACATCATAAAAAGTGCAGGATCTCGGTCTGCT AGGGGTAGTTATTTAACTTCCGATGAAGTTGAAGTTGAGATGTCAGCTGCGAGCAGTCATGGCGATATTGTTAAAAACGTTGCTGGATGTAGTGCAGCTA ATATTCCTCATGGAAGACAAGCTTGGAGTTATAACATTGATGAGATCGACCCCTCTATTATTCGGGAATTGCCTCCAGAAATCCAGGAAGAGATACAAAC CTGGCTTCAACCTCAAAAGCGGCCTAATGTGGTCAAACGAGGTTCTAGTATTACTAATTATTTCTTGCCTGACAATAGTAGATGATATGGTTAGTGACTT TGGTCTAATGTACATATTTTATGATGTTAACTTGATTGAGATTGATATGGACTCAGCCTAAGGAACTTAGTTGTGTGTTATGATGTTCCTCGTGGAAGAG TTGTGTAAATATGCATGCTTATCATTATTTCCTACAGAGTTCAGAATAATTTGCTATTTTCTTCTTTTTGGGATGTTCTAGAAGGATAGTTCTGTGATAT CTTCTAATGAACTCTTTTGTCCCAAAAAGATTGTATTAAATAACCATAAATGATGTCTCATTTGTTTTAGCTTGGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_138243; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_335297
| Blastp | DNA polymerase eta from Arabidopsis with 62.12% of identity |
|---|---|
| Blastx | DNA polymerase eta from Arabidopsis with 62.52% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44740) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459921.1) |
| Pfam | impB/mucB/samB family (PF00817.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |