| Id Trinity | TRINITY_DN44735_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_335307 |
| Sequence | CTCCATCTTTCTATGGAAGTTAATAAAATATAATCTTGTAATAAAAATGAACGTGAATGTTTAAAATTAAATTATTATTTTATGAAAAGTAAAATGTAAA GACATGAATTGAAAAAAAGGGTGTGGACAGAAAAGGAGAAATCTCGGAGCGGAGGAAAGAGAGAGAACGATGCCGGTCGCGAGGCGAGAGACGTCAGATT GTAGAGTCATCGGTCATGTAGATATGGACTGCTTCTACGTTCAAGTGGAACAGAGAAAGGAACCAAAACTAAGGGGTGTACCCACTGCAGTAGTACAGTA CAACTCATACAAAGGTGGTGGCTTGATTGCAGTTAGCTACGAGGCTCGTGCACATGGTGTTAAGCGCTCAATGCGGGGCGATGAAGCAAAGGAGGCATGC CCACAAATTCAACTCGTCCAAGTTCCGGTTGCACGCGGTAAAGCTGATCTCAATACATACAGGAGTGCAGGTTCAGAGGTTGTTTCTATTCTTTCACGGA AGGGTCGTTGTGAGAGGGCTTCAATTGATGAGGTGTATCTTGACCTTACTGATGCTGCTGAAGCAATGTTTATGGAAACTCCTCCAGAAAGCATGGAAGA TATTCAGGAGGAGGTTACCAAGTCTCATGTTTTGGGGCTTCAATTTGAGGATGGAAATGACCCCAAAGAAGAAGTTAGAAAGTGGCTTTGTAGGAGTGAT GCTAGTTATCAAGACAAGCTATTAGCTTGTGCTGCTTTCATTATTGCTGACCTCAGGATGCAGGTGTTGAAAGAGACGGAATTCACATGTTCTGCTGGCA TTGCTCATAATAAGATGCTGGCTAAACTTGCTAGTGCTATGAACAAACCTGCACAACAAACTGTTGTGCCACACTCATCTGTTGCAGGAAACAGCTTGGG GGAAAATTGGGAAGTTCCTTACAAAGTGATCTTGGTGTGAATACTGTTGGTGATCTGCTTCAGTTTTCAGAAGAGAAGCTACAACAACGTTATGGGATCA ATACCGGTACTTGGTTGTGGAATATTGCGAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCCAAGAGTCATGGTTCTGGCAAGACATTTCC TGGGCCTCAGACTTTGAAGACAATTGGTTCTGTTCAGCATTGGATAAATGAACTGTGTGAAGAGCTGAGTGAACGCCTTCATTCTGACTTAGAGCAAAAC AAACGGATTGCACACACACTCACTCTCCATGCTAGAGCATATAAGACGGGCGTTCCAAATTCAAATAGAAAGTTCCCTTCTAAATCATGTCCTCTAAGAT ATGGGACTATAAAGATTCAAGAGGATGCTTTAACTCTATTTCAAGCTGCATTACGTGAATTTATGGGCTTTTATAACAGTAAGACTAATTGGAACGAAAA TAACAAGTGGGGGATAACGTCACTTTCTGTTTCTGCAAGTAAGATTGTCCCCATACCATCTGGGACGCATTCTATTGTTAAATACTTTGGTGGGCAAACT CCATCTGGTTCTTCATTGAATCAGCCACTAGATAATGTCATCGATGAAGCTGTGCCACCGTCATCTTCAGGTACCGAAAATTGTTTGGGATTGATTCTCT GTGAATTACCAGTCAGATATCCTGAAGAAGACACAGCAATGAAGCATTCACAGGATTGTGTGGATCAACAGGATCCATTGTGCAATTTGTCCTCGAAAGT AGATGGCTTGACTGAAGAATCCTCACTCATCTCACCTACAGGAAGTGAAGACCGGAGAAAACAGAGTGAAGAACATAGAGATTTGCCTGCAAAAAAACCT AGGGTTGTTTTAAATACATCCAGTCTTAAAGCAGTTGAGAAGAGAAAGAGAGAAGGAAAGAAGCTTCAAGGGAATTGTTCAATTACAAAATTCTTCAATA ATTATCCAAACTCTCAGTCTTCATTGGAGCAAAAGAATGTTACAAATGCTCAAGGATCTCGGTCTGCTAGGGGTAGTTATTTAACTTCCGATGAAGTTGA AGTTGAGATGTCAGCTGCGAGCAGTCATGGCGATATTGTTAAAAACGTTGCTGGATGTAGTGCAGCTAATATTCCTCATGGAAGACAAGCTTGGAGTTAT AACATTGATGAGATCGACCCCTCTATTATTCGGGAATTGCCTCCAGAAATCCAGGAAGAGATACAAACCTGGCTTCAACCTCAAAAGCGGCCTAATGTGG TCAAACGAGGTTCTAGTATTACTAATTATTTCTTGCCTGACAATAGTAGATGATATGGTTAGTGACTTTGGTCTAATGTACATATTTTATGATGTTAACT TGATTGAGATTGATATGGACTCAGCCTAAGGAACTTAGTTGTGTGTTATGATGTTCCTCGTGGAAGAGTTGTGTAAATATGCATGCTTATCATTATTTCC TACAGAGTTCAGAATAATTTGCTATTTTCTTCTTTTTGGGATGTTCTAGAAGGATAGTTCTGTGATATCTTCTAATGAACTCTTTTGTCCCAAAAAGATT GTATTAAATAACCATAAATGATGTCTCATTTGTTTTAGCTTGGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_138243; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_335307
| Blastp | DNA polymerase eta from Arabidopsis with 78.15% of identity |
|---|---|
| Blastx | DNA polymerase eta from Arabidopsis with 78.15% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44740) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459921.1) |
| Pfam | impB/mucB/samB family (PF00817.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |