| Id Trinity | TRINITY_DN44735_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_335300 |
| Sequence | CTCCATCTTTCTATGGAAGTTAATAAAATATAATCTTGTAATAAAAATGAACGTGAATGTTTAAAATTAAATTATTATTTTATGAAAAGTAAAATGTAAA GACATGAATTGAAAAAAAGGGTGTGGACAGAAAAGGGGAAACGAATTGGAGGGAAATCTCGGAGCGGAGGAAAGAGAGAGAACGATGCCGGTCGCGAGGC GAGAGACGTCAGATTGTAGAGTCATCGGTCATGTAGATATGGACTGCTTCTACGTTCAAGTGGAACAGAGAAAGGAACCAAAACTAAGGGGTGTACCCAC TGCAGTAGTACAGTACAACTCATACAAAGGTGGTGGCTTGATTGCAGTTAGCTACGAGGCTCGTGCACATGGTGTTAAGCGCTCAATGCGGGGCGATGAA GCAAAGGAGGCATGCCCACAAATTCAACTCGTCCAAGTTCCGGTTGCACGCGGTAAAGCTGATCTCAATACATACAGGAGTGCAGGTTCAGAGGTTGTTT CTATTCTTTCACGGAAGGGTCGTTGTGAGAGGGCTTCAATTGATGAGGTGTATCTTGACCTTACTGATGCTGCTGAAGCAATGTTTATGGAAACTCCTCC AGAAAGCATGGAAGATATTCAGGAGGAGGTTACCAAGTCTCATGTTTTGGGGCTTCAATTTGAGGATGGAAATGACCCCAAAGAAGAAGTTAGAAAGTGG CTTTGTAGGAGTGATGCTAGTTATCAAGACAAGCTATTAGCTTGTGCTGCTTTCATTATTGCTGACCTCAGGATGCAGGTGTTGAAAGAGACGGAATTCA CATGTTCTGCTGGCATTGCTCATAATAAGATGCTGGCTAAACTTGCTAGTGCTATGAACAAACCTGCACAACAAACTGTTGTGCCACACTCATCTGTTGC AGGTTTGCTTGAGTCTTTGCCAATAAAGAAAATGAAACAGCTTGGGGGAAAATTGGGAAGTTCCTTACAAAGTGATCTTGGTGTGAATACTGTTGGTGAT CTGCTTCAGTTTTCAGAAGAGAAGCTACAACAACGTTATGGGATCAATACCGGTACTTGGTTGTGGAATATTGCGAGAGGAATCAGTGGGGAAGAAGTTG AGGGGCGACTACTTCCCAAGAGTCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGACTTTGAAGACAATTGGTTCTGTTCAGCATTGGATAAATGAACT GTGTGAAGAGCTGAGTGAACGCCTTCATTCTGACTTAGAGCAAAACAAACGGATTGCACACACACTCACTCTCCATGCTAGAGCATATAAGACGGGCGTT CCAAATTCAAATAGAAAGTTCCCTTCTAAATCATGTCCTCTAAGATATGGGACTATAAAGATTCAAGAGGATGCTTTAACTCTATTTCAAGCTGCATTAC GTGAATTTATGGGCTTTTATAACAGTAAGACTAATTGGAACGAAAATAACAAGTGGGGGATAACGTCACTTTCTGTTTCTGCAAGGGACGCATTCTATTG TTAAATACTTTGGTGGGCAAACTCCATCTGGTTCTTCATTGAATCAGCCACTAGATAATGTCATCGATGAAGCTGTGCCACCGTCATCTTCAGGTACCGA AAATTGTTTGGGATTGATTCTCTGTGAATTACCAGTCAGATATCCTGAAGAAGACACAGCAATGAAGCATTCACAGGATTGTGTGGATCAACAGGATCCA TTGTGCAATTTGTCCTCGAAAGTAGATGGCTTGACTGAAGAATCCTCACTCATCTCACCTACAGGAAGTGAAGACCGGAGAAAACAGAGTGAAGAACATA GAGATTTGCCTGCAAAAAAACCTAGGGTTGTTTTAAATACATCCAGTCTTAAAGCAGTTGAGAAGAGAAAGAGAGAAGGAAAGAAGCTTCAAGGGAATTG TTCAATTACAAAATTCTTCAATAATTATCCAAACTCTCAGTCTTCATTGGAGCAAAAGAATGTTACAAATGCTCAAGGTACTAAAATATCATCATCACTT AGTAATTTTTTATTCCATTTCCTTTCATTATACTTGTGCAATCCCATCTCTGTTATTCCTACATCATAAAAAGTGCAGGATCTCGGTCTGCTAGGGGTAG TTATTTAACTTCCGATGAAGTTGAAGTTGAGATGTCAGCTGCGAGCAGTCATGGCGATATTGTTAAAAACGTTGCTGGATGTAGTGCAGCTAATATTCCT CATGGAAGACAAGCTTGGAGTTATAACATTGATGAGATCGACCCCTCTATTATTCGGGAATTGCCTCCAGAAATCCAGGAAGAGATACAAACCTGGCTTC AACCTCAAAAGCGGCCTAATGTGGTCAAACGAGGTTCTAGTATTACTAATTATTTCTTGCCTGACAATAGTAGATGATATGGTTAGTGACTTTGGTCTAA TGTACATATTTTATGATGTTAACTTGATTGAGATTGATATGGACTCAGCCTAAGGAACTTAGTTGTGTGTTATGATGTTCCTCGTGGAAGAGTTGTGTAA ATATGCATGCTTATCATTATTTCCTACAGAGTTCAGAATAATTTGCTATTTTCTTCTTTTTGGGATGTTCTAGAAGGATAGTTCTGTGATATCTTCTAAT GAACTCTTTTGTCCCAAAAAGATTGTATTAAATAACCATAAATGATGTCTCATTTGTTTTAGCTTGGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_138243; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_335300
| Blastp | DNA polymerase eta from Arabidopsis with 76.21% of identity |
|---|---|
| Blastx | DNA polymerase eta from Arabidopsis with 76.21% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44740) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459918.1) |
| Pfam | impB/mucB/samB family (PF00817.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |