| Id Trinity | TRINITY_DN44907_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_411380 |
| Sequence | GCAGTGAATAGCAACAGAGAAATGTGCATCCTGTATGTCACTTCCAATAAGCCATTAATACATACATAACCCCACTCCTAATCTCTCCTCTCCAATTCAA AACAGAAACCGTTTCCCCACTCTCTGCAATTTTACTCGCTCAAAAATTAATAAATAAAAATACAATACAACTCAACCTCACGTACACATACAGACAAAAA AAGAAAACTCGAGAAACACAAACAAAATAAAAGTGAAAAACACAGATTCATAGAGACTAATATGTCAAACACAAATCTATAACCCAACATTACTAGTACA CAACACCGTAATGTCTACGTTAATGGACCACTCCACCGCCGCTAGCTTATTATACGGTGAAGACTGCGCCGAAATAACTTCCGACCACCTTTCTCCGCCA CTAGATGAGGAAAGCATCACTACACTCATCGAAACAGAGTCCGATCACGTGCCGGAAAAAGACTATCTCCATCGCTGTCGCCAACGATTAGTGAACATGA CGGCACGCTTAGACGCCGTTAACTGGATCTTAAAGGTTCACGCTTATTATCAATTCCATCCAGTAACTGCGTTTCTCTCTATCAATTACTTGGACCGTTT TCTCTCTCGTACTTCTCTTCCGGTAATGAAAATTCAGAAATTGATTATTTTTTATTTATATATACACAAAATTATGAAGTTGTTTTTGCAGAGAGAAAAT GGGTGGGTGTTTCAGCTAGTATCAGTGGCGTGTTTGTCTATAGCGGCGAAAATGGAGGAGCCTGAAGTGCCATTATTGATGGACCTTCAATTATTCGAAC CCAAATTCATGTTCCAACCCAAAACGATTCAGAGAATGGAGCTATGGGTGATGAATAATCTTAATTGGAAACTGCATTCTGTAACACCCTTCGATTATCT TCATTACTTCATCACCAACCTACCTTCTTCTTCAGAAACACGAGCACGAGGAATGAAGCGGTTATTCTTCACAGCCTCTGATCTTATTATTTCCACAACT CGTGGAAATGGTGAAATGGTGCGAACAACTAATGGAGGAGCATGTGGTAGACACGTGTCATGATAAAGACAAGAGAGGTGAGGTGGCAAGCCCCGTTGGC GTGTTGGATGCCCCAATTTGTAGCAGTTGTGACATGTCTTCCGACAGGAACCACCAATTTGAAGAAGCTGAGTCGCTAATCAAAAGGCTGCGATCCCCTG CATATGATGTATAGCATTACCCCTAGATAACACCTCAATTTCCCTCAGAGGAAGAGGCTATATACTTTTTGCTTTTTTTATATTTTCTGTCATTCTCATA TATGGATGATATTTTAACTTTCATATTGATTTGATATTTTATATTATAAATTACCTAAATAGTCTTCGTTAGGCTCAAGGTAAATTTTCTCCTCTATTTT AGTGATTAAAACATATATTCTAGTTTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_138558; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_411380
| Blastp | Cyclin-D4-1 from Oryza sativa with 39.73% of identity |
|---|---|
| Blastx | Cyclin-D4-1 from Oryza sativa with 40.62% of identity |
| Eggnog | (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1) S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin(ENOG410XRKC) |
| Kegg | Link to kegg annotations (4347313) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441521.1) |
| Pfam | Cyclin, N-terminal domain (PF00134.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |