| Id Trinity | TRINITY_DN44921_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_411113 |
| Sequence | CCGAATTCGTCATTAGAGGACAAGAGAGCATGCTTTACTTGTTGCCTCTCCTTTTTTCTGTTTTATTACCTTAAAAAACATGCTCCCTCTAGTATTACTG TATTACTGCACTTTCTTGTCTTTCAAGCTACCTCAAAAACTGTCATATTATCATATTTCTATAACATTGTTTTTTCTTACCTCACTTCTTAATTCCTTTC CTTCACATTACACTCTCAATTACATTTCTCATTTTTTTCATTCTTCCCTACAAACCCTAACAAACATTATTCTCTTTCTCATTTCACTTCTCTTTTCTAT TTAGCTACTACCATGGATGATCCTGAAGGAGATTCTAGTAATGAGTATAATTGGAACACCGATGATGAAGATGAAGTGTTTGGCATTACATCTTCGATTC CCAGCATAATTCAAGAAAGCTGTGGACATAACCTGCTTGTAAGCAGTTCAACTTGCACGTGTACCAAACAGGGCAAGCTGATTCTTCACTTTGTTGGAAT GGGATTTTCCAAAGACCAAGTGATCAAAGCAATTGAGGAAAATGGTTGTCTTGCATTCTCATTTAACATGTTTGACCTTGAATGATAAACTTAAGTTTTG TTTACGTCCATGGTAGTGGTAGGAGAAGAAAATGAGGAAGACATTTTGGAAACTCTGCTAACACTCACTACTTTGACTACTCTAGAGGATCCTTCACCAG GTGCTTCTAATAGGCCATTTTCTTCTGCTAAGAAAATTGTTAACCTACTTGATAGCTCTGATGATGAGGATAGTTATCCAGGAAGTGGGGAAAACAGTTT TAACTTTGAAAGGGACAAGATACTGACAGTACTAGTGAACATGGAATACCCTATTGAGGAGGCTTTGATAGCTATAGAGAAATGTGGCCCTGAAGCCGAA ATCTGTGAGCTTACAGATTTCATTTGTGCTGCTCAATTAGAAAAGGAAATTGACACTCATCTTCAAAATTTGCCTAAGAAGAAACAAGATGTATCTGTTT CTATGCATAAAAAGCGAAGGCGTGGTTATTACTTTCACAGAGATAAGAGATTGAAACTTGATGATGAGGGGAAGGTATCGGCAATTGATATGGAGATGAA GCAAATGCGATCCTCTGAATCCATGACCGGATTTGGTACACGCAATCAACTCTATCCTGCTGTTGCAAGAAGGCTCCGGCATAAAGTAACAGCAGGCCAA CCATACTTCTATTATGAAAATGTGGCTGGTGCTCCTAAAGGAGTTTGGAGGAAGATATCCAGTTTTCTGTTTGAGATTGAGCCAGAATTTGTTGATTCAA ACTACTTTTGTGCTGCAGCAAGGAAAAGGGGATACATCCATAATCTTCCCATCGAAAATCGTTCTCGCCTGCTTCCTATCCCACCACTCACTATCCAAGA AGCTTTACCTACAACCAAAAGGTGGTGGCCTTCATGGGACACAAGAATACAACTCAATTGCCTTATAACTACCATAGCTCCTGCCACAGTAACAGAGAAA ATAAGGAAAGCCCTTGAGGAATGTGATGCCAAACCGCCTCCAACTGTCCGAGAATATGTACGTAAGGAGTGTAAAAACTGGAATTTGGTTTGGGTTGGGA AGAACAAAGTGGCACCTCTTGAGCCTGATGAATATGAGATGCTACTGGGATTCCCAAAGGATCACACTAGAGGCGGTGGAATCAGCCGGACAATGAGATA CAAGGCACTTGGAAATGCATTTCAGGTTGATACAGTTGCCTACCATCTTTCAGTTTTAAAGGGTCGTTTTCCAAAGGGCATCAATGTTCTATCCCTCTTC TCTGGCATTGGGGGTGCTGAGGTTGCTTTACATGGGCTTGGGATAATGCTAAGAAATGTGGTATCTGTGGAAGTAGCCGAAGAAAACCGAAACATTCTTC GCAGTTGGTGGGAACAGACTAACCAACAGGGAAATCTAATTGAGGTTAAGGATGTTCAGCATGTTACTTGGGATCAGTTGGAGCAATGGATAACCTCTTT TGGTGGATTTGACCTCATCATTGGAGGGAGTCCCTGCAACAACATTAGTGGCAGCAACAGGGTGAGTAGAAATGGACTGGAGGGAAAGCACTCATCCCTT TTCTATGAATATTATAGGATTGTTGAGGCAATTATGCATATACAGTGATAACAAGCTTATGTAAAAATTACATTTCACAAGTGATTTTGTTAATTCCAAC TTAATTCTGTAAATGTACTTGGCAAGCTTATGTAAAAAAGGGGGAAATTAGATTACACAAGTGATTTTGTTAGTTCCAACTTAATTCTGTAAATGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_138578; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_411113
| Blastp | DNA (cytosine-5)-methyltransferase DRM2 from Oryza sativa with 54.41% of identity |
|---|---|
| Blastx | DNA (cytosine-5)-methyltransferase DRM2 from Oryza sativa with 54.41% of identity |
| Eggnog | DNA (cytosine-5-)-methyltransferase(ENOG410XQ4Y) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422938.1) |
| Pfam | C-5 cytosine-specific DNA methylase (PF00145.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |