| Id Trinity | TRINITY_DN44949_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_411139 |
| Sequence | TATAAAGTTTTATTTTTTCTGTCAAATTTCTTATCATGTGTGATACACATTAACAAAAATCTCATGTCTCAAGTTCTATCTCATACCAATGACAATGAAG CAAAAACAGAAAAAATAATAAATGTATTTTTTTAATTAATATGAAATGTTTTCATTAGTGTGGGACAGAGTTTGAGACAACAAATCTTTGTTCGATACAG ACACATTAATACTTATCGGTATATACAACATGATATCACTCAATTACAACTCATCAATCCATGCAAAATACTAAGTTTTCTTGCTAAGTTATTTGTTTTC CTATTAAATGAAACAAGTCACTATTTAACTACCTTAAATTTCCTTCTTTGTATATTTTAACTTACTTAAAATACTCTGAATTTTGTTGAAACATTGTGAA AATTGTATGCATCTTATCATTTAATCACTGTATTATTCATATTTTTGTATCTCTTGTACTTGTATCTGTATCCATGCTTAGCTTGTCAATTAACATGTTT GAAATGAGAATTTACAGCAACTGTATTTGGACAAAATCTAAAGTTGGAACCATTGAAGCCAGAGAAGAAATCCATGTGGAAAAGGGAAATGAAGGTTCTT CTATCAGTGTGTGATTACATAGTAGAATTTGCTCCAACTGCACAATATTTAGAGGATGGAACAATTGTTGAGATGATGAAAAGCAGACCAAGAACAGATA TCTACATCAATCTCCCTGCTCTGCAGCAACTTGATACAATGCTCATAGAAATATTTGATAGTTTCGAAGATACTGAATTTTGGTATGCAGAGAACATATC AGTTAATTCGACTCGATTACATGCAACCTCGTCTCGTAGGATTGTTCATCATAGGAATGATGAGAAGTGGTGGGTTCCAGTCCCTTGTGTTCTCCCTGGT GGCCTCTCAGATAAGTCAAGGAAGCACTTGATAGAGAAACGAGATTGCGCTAATCAAATTCATAAAGCAGCCATGGCGATAAATAGCAATGTTCTCGCCG AGATAGATATACCAGAAACTTATGTTGAAAATCTTCCTAAGCTGAAATTCTATTGCCAAGTGAGTGAGGATTTCATTAAATGTGATCCTATAAAGCTAAT GTCTTGGGATTTATCATCAAATTTCATAAGCTTTTTGTGGAAGCCAATAATAGCAGCTGAGGCTTGTAGAAAAAGGGATGATATAATTTCAGATAAGAAT GGAAGAGCAAGTCTCGGGGACACAATTTACCATTATATGTATGCTACACATGAGTTTTCACCCGATCGTCTTCTTGACTATCTCAAAATAAGTTCTGAAC ACGAAGCACTTGAGTTGGCAGACAGGGTTGAATCATCGATGTACACATGGAGGCGTAAATCTTGTATGAGCCATTCAAAATCATCATGGAATGAGGTAAA GGATCTCATGGCTGACACCGACCGGAAGGACAAAAACTACACCTTAGCTGAGAGAGCTGAGAGTTTATTGTTTTGCCTGAAGCTAAGATATCCTGAACTC TCACAAACTTCTTTAGACTCATGCAAGATTCAATACAACAGAGATGTAGGGAAAGCAGTACTAGAGAGCTATTCAAGAGTATTAGAAGGCCTAGCATTCA ACCTTGTATCTTGGATTGAAGATGTTCTTTTTGTCGATAAATCAATGTGGAACCGAGATGTCTAGAAATCGCGATTGGGTTTTAACATAGTACTCTAACA CCGTTCATCTTTTATCGTACTCTCTTCGTGAACCGTTGCTTTGGGAGATGTAGACACCAGTACACGAGGTTCTCACCTAGTGTATAGTTGTATGTAAAGT ATTGTATTTGCATCCTTATAAAGCTTGGTTGTTGTGTTAGAAACTACGGAAGACAGATTCGCTTTGACTTGAAGTGTTAAGCTTAGTTTATAGCAGCTAC TGACAGAATTTTTTTATTGATTTCTTCAATATTTCTGAAAGAGCTGCTATGTCTCATTATTATTACATCTAGAATGCATAACCAGTATGCTCTAAATCAC AAAACTGATGCAGAGAAGTTAAATCAACATAATCTAAATTATGCACAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_138634; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_411139
| Blastp | Rop guanine nucleotide exchange factor 3 from Arabidopsis with 57.78% of identity |
|---|---|
| Blastx | Rop guanine nucleotide exchange factor 3 from Arabidopsis with 58.58% of identity |
| Eggnog | rop guanine nucleotide exchange factor(ENOG410Y9NY) |
| Kegg | Link to kegg annotations (AT4G00460) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414323.1) |
| Pfam | PRONE (Plant-specific Rop nucleotide exchanger) (PF03759.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |