| Id Trinity | TRINITY_DN45048_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_411621 |
| Sequence | TATTACATCTACAAAAGTAGATTGTAATTTCATCATATCATTTATTCCTTCCTTTTGATACTTTCCTCTCGAGTGATAATCCCCACCCAAAGAAAACATG CATTATTGAAATAAACACACACCACACATTTTTCTTCAAGTAGTAACAAACAAGCAAACAAACACCCAAAACACCGCACATGATGATGTCGTCGCCGGCT GAAAGTGACGTCATGTCACCGACTCCAGGAGCATTCAGGCTCCGTTGGGACGTGTTCTTGAGCTTCAGAGGCACCGACACACGCGAGAGCTTAATCAAAA GCCTCTACGAGTCGCTCCACGCTCACGGTGTTCGTGCTTTCCGCGACGACGATGGTTTGGACCGTGGCGACGAGATAGCTCCGAGTCTTTTAGAGGCCAT TGATGACTCTGCCGCCTCCATAATAATAATCTCACCCGACTACGCTTCTTCACACTGGTGCCTTGAGGAGCTGGCCAAGATTTGCGAGTGCAAGAGGCTG GTCCTTCCTGTTTTCTATCGGGTAGATCCATCTGATGTTCGGAAACAACTGGGTCCCTTTGAAGCGGGATTTAGATCTCATGAGTTAAGGTTCAAGAATC AGATGGAGAAGGTTGAAAAGTGGAGGAAAGCTATGAAGAAAGTTGGCGGAGTTGCAGGTTTTGTATTCAACAACAACAGTGACAAAGACAATCTTATTCA GCGTTTGGTGCAAAGGGTTTTGAAGGAACTGAGTAACACTCCAATGTGTGTAGGTGAATTCACAGTGGGGCTTGAAGATCGTGTTGAGAAGGCGTTAGAG TTGTTAAAGGTAGAATCCAATGGTGTGAAAGTTTTGGGATTGTATGGGATGGGTGGGGTTGGTAAGACAACCATGGCCAAAGCTATTTTCAATACTATTG TTGATCGTTTTAAGCATCGCTGCTTCATTTCAAATGTTAGAGAATTTTCATCCAAAAGTGATGGTTTGGTTTCTCTTCAAAGTAAACTCATTAAAGATCT TTCCCTTGGAGCAGTGGCACCCATTTTCACTGATATCCACCATGGTATTTCTGTTATCAAAGGACGTGTTCGCGAAAATCGAGTTCTTATAATCTTAGAC GATGTTGATAATGCAAACCATCTTGACATTTTGATTGGTAAGAGCAAGAGCAATTGGTTTTATGAAGGGAGCCGTATAATAATTACGACAAGGGATAGGG AAGTTTTAACCAAGAGTAATGTGAATGAGTTGTATGAAGTTAAGGAATTGTATTCATCTGAAGCACTAGAGTTATTCAGTTACCATGCACTGAGAAGAAA GGAACCTACACAAAATTTTCTGCATCTGTCAAAGCAGATTGTGTCTCTCACAGGAAAACTACCTCTGGCTCTGGAAGTTTTTGGTTCATTCTTGTTTAGC AAGAGGAGAGTGGAAGAATGGGAAGATGCTTTAGAAAAGCTGAAACTAATTCGGCCTAAGCATCTTCAAGATGTGTTGAAGATAAGTTATGATGGGTTAG ATGAACAAGAGAAGTGTATATTTCTTGATATTGCTTGTTTATTTGTTCAGATGGGAATGAAGCGTGATGATTTGATTGATATATTTAGAGGTTGTGGTTT TAGAGGGGAAATAGCTATCTCAGTTCTTGTTGAAAAATGCTTAATCAAGATCACTGAAGACAATACATTGTGGATGCATGACCAGATTAGAGACATGGGA AGACAAATCGTTCTGGACGAAAATCTTGTGGATCCTGGTATGCGTAGTAGACTGTGGAATCGTGCTGAGATCATGACTGTTATAATGGATGTGAAGAGAA AAACAAGGAGGTTGTACTTCATACTAAAGCTTTTGAACCAATGGTTACCCTGAGACTGCTCCAGATCAATAATCTGAGATTGAAAGGTGCCAGAGAACTT GATGGTCCTGAACCTCTCCTACTGCATTCAACTTGCTTCTATCCCTGATTTATCCGGGTGTGGACGTTTAGAGAAGATTGTTCTGGAAAACTGCATTAGT CTAACTAGGATCCATGAATCATTTGGCAGTTTGATAACCTTGCGTAGTTTGAATTTGACGCGTTGTTCAAATCTTATTGAACTTCCCAGTGATGTCTCTG GACTGAAACATCTAGAGAGCCTCTATCTCTCTGGCTGCTTGAAGTTGAAAGCCTTACCAGAAAACATAGGCAGCTTGAAATCCTTGAAAACTCTTCTTGC TGATAAAACGGCTATAAAAGAGATCCCTGAGTCCATTTTTCGCTTGGCGAAACTTGAACAACTTATTTTAGATGGTTGCCAACATTTGACAAGGCTTCCC AACTGTATTGGACATCTAAGTTCTTTGCAAGAATTATCTCTTAATGACTCTGGATTAGAAGAATTACCCAACACAATTGGATCATTGAAAAACCTTGACA AACTTAGTTTGATGTGTAAGTCTCTCACTGTAATTCCGGATTCAATAGGCAATTTGATATCATTGACAGGACTTTGGGCTAACCGCAGTGCAATCAGAGA ACTCCCTTCTAGCATTGGTTCTTTATCATATCTGAGGGAATTATCAGTGGGAAACTGCAAGTTTCTCAGCAAATTGCCTGATTCAATTAAAGCTTTGGCC TCAGTTGTGGAGCTTCAGTTAGACGGAACAGCCATCACGAATTTGCCAGATCAGATTGGAGAGATGAAACTACTAAGAAAACTTGAGATGATGAATTGTA GTAATCTTGAATCTTTACCAGAATCAATTGGCAACCTAGCATCTCTTGTTACTCTCAACATATTCAACGGAAAGATTAGGGAATTGCCCGAGTCCATTGG ATCGCTGGAAAATCTAGTAAACTTAAGATTGAACAAATGTAGAATGCTAAGGATGCTTCCAGCTTCTATAGGAAATTTGAAGTCTCTATATCACTTTTTC ATGGAGGAAACGGCTATGTCGGACTTGCCTGAAAGCTTTGGGATGCTCTCAAGCTTGAGGACATTGAGAATGGCAAAGAGACCTGATTCAGTTACCTATA ACAATAGCATACTTGCAGAACCTGAAGTTCCTGTTTCAAATGACAACCTCAACTATTTTGTACTGCCATCTTCCTTCTGCAATCTGACCATGTTAATTGA GCTAGACGCTCGAGCCTGGAATATATCTGGGAAAATTCCTGATGATTTTGAAAAGTTATCATCATTAGAGACTTTAAAGTTCGGGCAAAACAATTTTCAC ACCCTCCCATCTAGCTTGAAGGGCCTTTCTGTTCTCAAGATTCTTGAACTACCAAACTGCAATGAGCTGATATTTCTCCCACCACTTCCTTCAAGCTTGA TTGAGCTTAATGTTGAGAACTGTTCTGCATTAGAGAGCATCCATGACATATCAAATTTAGAGAGTTTACAGGAATTGAAACTCACAAATTGTGTAAAAGT GATGGATATTCCAGGTCTTGAAAACTTGAAGTCCTTAAGAAGGTTGTACCTCAGTGGTTGCAGTGCATGCTCCTCCCATGTAACTAAAAGACTTTCTAAG GTTGGTATCTTCTCTTCTCCCTCCCTCATCATCCTTCAATGAATAACTAAATTAAGAAACGTAAGTGTCAGACCACATTTGGTTTGTTTCCTGGATTTGA ATATGTTTAAGTAAATACTCATTTCAGTCCCAGTGTTTTTTTTTTTACTTTACCTCGTCTCTACAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_138814; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_411621
| Blastp | TMV resistance protein N from Nicotiana with 38.9% of identity |
|---|---|
| Blastx | TMV resistance protein N from Nicotiana with 34.01% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003628577.1) |
| Pfam | TIR domain (PF01582.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |