| Id Trinity | TRINITY_DN45143_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_357902 |
| Sequence | CGCAGGCCCAATAAAACACTTCAACTCATTCTCCTTCCCAGTTCAACCTCGCTTCAATTCATCTCTCTTACAGTAACTGATTCAATTCAACCTCAAACGT TAGGAACAATGGAAGGTGAATTGGCGAATATAAAGAAGTGGAATATACTGTACCCTGTTTACATCAATTCCAAAAAGACCATGGCACAAGGAAGACGAAT CGGTCTCACCAAAGCATGTGAAAACCCTACTTGTGCTGAAATTGGTGATTGCTGCACCTATTTTAAACTTCCCTTTGCTATTGAGATAGACAAGGCTTAC CCACGTGATTTCATGCAAAGAGGGAGGGTGAGGGTTTTGCTCAAAAAGGAGGATGGAACCCTGTTTAATCCCGCCATTGCATCAAGTAACTTGCTCCATT CTTTTATATTTTGATTGCTGTGCGTTTTAGCTACCCATTTTCGTATAAATTTGATCGTTGTATAGTTTTCATCTTATATCTCAATGTTGAACTGTGCTTT GTAGCGTGTCTTGGATTTGGTGTGTATAGATTGAGATTGGTAAACATTGTCAACGGCCATAGGAGGCCACCCTGTTTCTATCTCATGCTTTCAAGGCAGA ATGTTGCTTTAATATATAGTTATCAGTTTCATGATTTATTGCAACTATTATGTTGGATATTGGGTTGGCATTTTCATCTTATATTTTCGATTCCTAAAAT TAAGTTACACTTTAATGTGACCAAGAACCATGGGCTTTTGTTGGTGTGTATCAATTATGATGCTTTGATATAAATAGGTAGCTTTGAAATGTATTGATAT GCTTTACCATGGTCAGGTATCTTGACAATTTTGGAAGTCTTTGTTTCTACTCATTATAAAGATTTTAGGAGTAGAAGAGAGTCAAGAGACAATAAGATGC CTCGGAAGTCTCTTCCTTTTACTAGTCCTTTGTATTTGGTAGTGGTATATAATTCCAGAATTTTGGCCATAAGCTGTAACAGTTAGTGGAAGTGCTAATT TTAAACAAGTTGTTGTAGGTGAAATTTGTACCTAAAGTTATCAACAAGGATTAAGTTGTAAAAGTTGCATTGCTATAATGACTTTTCTGTAGATGATATT GTTATTACTGTTTTAAAGTATCGTAGGTTGAGGTTCTTTAGATTGATTAGTTGTTGAAATAGCAGATACAATTTCATTTTTTAAAGGGGAAGTTTTCATT GAGATGTATAAAAGGCCGGGTAGGATTATTCTGAGCCCCCCAGATCCTTCCCCTTCACTTCCTGATTAGAGTCTAATATATCCATGAATTGACCTCTTTA CTCGTCTTCCTTTTTTATATCCTTTAAAGACAGAATAAAAATCACTTGCATTTTTTAAATCTTTTTGAATCCTATTGTTGACTGTTAGCCATCCAATTTT TCTACTTCCACATCTTCTTTAACTTTTATTACCTGCTTATAGAGATGAATTAGACGGCTAAACTTCAAACCGTTAACCCTACCAAAAAGGAGTGGGTTGC CATATTTGATTTAGTCAGTATGAACTTAATTCAAGTTTGATAAGAAACACAGATAAGCCACTTTATAGACACATTAGAGTTTGCGAATGGTATTAATGCA TGACACTTTCTTAGTCCATATGTATGAACTACTCTTCATGAGCTAAATGTTATACATTTCTCAATTAAAAAATCTAGTTGTGTCTACCGTTAATGGTTTC TTTGGCACTAGCAACATGAACAAGCAGTGTTTTCCCCACTAGGTGTGGTTGGCTACATGAATCAAATAAGCCGTCATGTTCCTTTGTTAACCATGTCTTT GGAAATACCATTTAAATTAGTATGGATCTAACTCTAAAGTTTTTAGTCACATTTTGTCACCATTTAATGAACCTTCCAACATATAAGATTAAGCAAAGCT GTTTAGTGTAGATACAAAGATATCTAGGCTGTTGAATGATGTTAAATGGCTTCATTAATTTAATGTCTCTGAAACAAGTAGTTACAATTCTTTTGCAAGC ATCCCATATGAAATGGTTGACAAAACTACTTTCTGCAGTTATTTGCTGTAACCCGTAAGTTGCAAAGGTATATAGCGACTCTGGAACATGCCTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_139012; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_357902
| Blastp | Signal recognition particle 19 kDa protein from Arabidopsis with 68.75% of identity |
|---|---|
| Blastx | Signal recognition particle 19 kDa protein from Arabidopsis with 68.75% of identity |
| Eggnog | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP (By similarity)(COG1400) |
| Kegg | Link to kegg annotations (AT1G48160) |
| CantataDB | Link to cantataDB annotations (CNT0000044) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463344.1) |
| Pfam | SRP19 protein (PF01922.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |