| Id Trinity | TRINITY_DN45143_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_357907 |
| Sequence | ATTCAACTCTCCAATCTTCAATTCTTCTGAATCCTCCATCATTCTTTACAAACCAAAACCCTAACCCCCTTTTTCCCAATTTTCTCATTTCACTTCGATG GGCCAAATAGAAGCCCAATAACATATTTAGGCTTAATCAGGCCCAATAAGATACTTCACCAACTCTTCCTCGCTTCTCTTTCTCTCTCACAGTAACATCT CCGATTCAACCGCAACGTTAGGAATAATGGAAGGTGAATTAGCGAATATAAAGAAGTGGAATATACTGTACCCTGTTTACATCAATTCCAAAAAGACTAT GGCACAAGGAAGAAGAATTGGTCTCACCAAAGCGTGTGAAAACCCTACATGTGCTGAAATTGGTGATTGCTGCACCTATTTTAAACTTCCCTTTGCTATT GAGATAGACAAGGCTTACCCACGTGATTTCATGCAAAGAGGGAGGGTGAGGGTTTTGCTCAAAAAGGAGGATGGAACCCTGTTTAATCCCGCCATTGCAT CAAGAAAACAACTTATGCTTCGCATTGCAGAGATGGTACCTAGACATCCTGGAAGGACTAAGAAGCCAGAGGCTGCATCAACATCAATTGGTGGACCTTC CACCAAATCTGGGAAGGGTGGAAAGAAGAGAAGATAATTCTGAAACATAAAATATTTTTATCTTGGAAACATAAAATATGTTCCCTGACTGGATAGTCTA ACCGAACAAAAGGAATTTGCCCAGAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_139012; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_357907
| Blastp | Signal recognition particle 19 kDa protein from Oryza sativa with 64.52% of identity |
|---|---|
| Blastx | Signal recognition particle 19 kDa protein from Arabidopsis with 70.27% of identity |
| Eggnog | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP (By similarity)(COG1400) |
| Kegg | Link to kegg annotations (4340957) |
| CantataDB | Link to cantataDB annotations (CNT0000044) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463344.1) |
| Pfam | SRP19 protein (PF01922.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |