Ll_transcript_357909

• Id Trinity: TRINITY_DN45143_c0_g1_i6
• Name Transcript: Ll_transcript_357909
• Sequence: ATTCAACTCTCCAATCTTCAATTCTTCTGAATCCTCCATCATTCTTTACAAACCAAAACCCTAACCCCCTTTTTCCCAATTTTCTCATTTCACTTCGATG GGCCAAATAGAAGCCCAATAACATATTTAGGCTTAATCAGGCCCAATAAGATACTTCACCAACTCTTCCTCGCTTCTCTTTCTCTCTCACAGTAACATCT CCGATTCAACCGCAACGTTAGGAATAATGGAAGGTGAATTAGCGAATATAAAGAAGTGGAATATACTGTACCCTGTTTACATCAATTCCAAAAAGACTAT GGCACAAGGAAGAAGAATTGGTCTCACCAAAGCGTGTGAAAACCCTACATGTGCTGAAATTGGTGATTGCTGCACCTATTTTAAACTTCCCTTTGCTATT GAGATAGACAAGGCTTACCCACGTGATTTCATGCAAAGAGGGAGGGTGAGGGTTTTGCTCAAAAAGGAGGATGGAACCCTGTTTAATCCCGCCATTGCAT CAAGTAACTTGCTCCATTCTTTTATATTTTGATTGCTGTGCGTTTTAGCTACCCATTTTCGTATAAATTTGATCGTTGTATAGTTTTCATCTTATATCTC AATGTTGAACTGTGCTTTGTAGCGTGTCTTGGATTTGGTGTGTATAGATTGAGATTGGTAAACATTGTCAACGGCCATAGGAGGCCACCCTGTTTCTATC TCATGCTTTCAAGGCAGAATGTTGCTTTAATATATAGTTATCAGTTTCATGATTTATTGCAACTATTATGTTGGATATTGGGTTGGCATTTTCATCTTAT ATTTTCGATTCCTAAAATTAAGTTACACTTTAATGTGACCAAGAACCATGGGCTTTTGTTGGTGTGTATCAATTATGATGCTTTGATATAAATAGGTAGC TTTGAAATGTATTGATATGCTTTACCATGGTCAGGTATCTTGACAATTTTGGAAGTCTTTGTTTCTACTCATTATAAAGATTTTAGGAGTAGAAGAGAGT CAAGAGACAATAAGATGCCTCGGAAGTCTCTTCCTTTTACTAGTCCTTTGTATTTGGTAGTGGTATATAATTCCAGAATTTTGGCCATAAGCTGTAACAG TTAGTGGAAGTGCTAATTTTAAACAAGTTGTTGTAGGTGAAATTTGTACCTAAAGTTATCAACAAGGATTAAGTTGTAAAAGTTGCATTGCTATAATGAC TTTTCTGTAGATGATATTGTTATTACTGTTTTAAAGTATCGTAGGTTGAGGTTCTTTAGATTGATTAGTTGTTGAAATAGCAGATACAATTTCATTTTTT AAAGGGGAAGTTTTCATTGAGATGTATAAAAGGCCGGGTAGGATTATTCTGAGCCCCCCAGATCCTTCCCCTTCACTTCCTGATTAGAGTCTAATATATC CATGAATTGACCTCTTTACTCGTCTTCCTTTTTTATATCCTTTAAAGACAGAATAAAAATCACTTGCATTTTTTAAATCTTTTTGAATCCTATTGTTGAC TGTTAGCCATCCAATTTTTCTACTTCCACATCTTCTTTAACTTTTATTACCTGCTTATAGAGATGAATTAGACGGCTAAACTTCAAACCGTTAACCCTAC CAAAAAGGAGTGGGTTGCCATATTTGATTTAGTCAGTATGAACTTAATTCAAGTTTGATAAGAAACACAGATAAGCCACTTTATAGACACATTAGAGTTT GCGAATGGTATTAATGCATGACACTTTCTTAGTCCATATGTATGAACTACTCTTCATGAGCTAAATGTTATACATTTCTCAATTAAAAAATCTAGTTGTG TCTACCGTTAATGGTTTCTTTGGCACTAGCAACATGAACAAGCAGTGTTTTCCCCACTAGGTGTGGTTGGCTACATGAATCAAATAAGCCGTCATGTTCC TTTGTTAACCATGTCTTTGGAAATACCATTTAAATTAGTATGGATCTAACTCTAAAGTTTTTAGTCACATTTTGTCACCATTTAATGAACCTTCCAACAT ATAAGATTAAGCAAAGCTGTTTAGTGTAGATACAAAGATATCTAGGCTGTTGAATGATGTTAAATGGCTTCATTAATTTAATGTCTCTGAAACAAGTAGT TACAATTCTTTTGCAAGCATCCCATATGAAATGGTTGACAAAACTACTTTCTGCAGTTATTTGCTGTAACCCGTAAGTTGCAAAGGTATATAGCGACTCT GGAACATGCCTG
• Tissue: pods
• Gene name: LI_gene_139012;
• Additional information: details;

Expression of Ll_transcript_357909

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.2
• PS3: 0.2
• PW1: 0.3
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_357909

• Blastp: Signal recognition particle 19 kDa protein from Arabidopsis with 67% of identity
• Blastx: Signal recognition particle 19 kDa protein from Arabidopsis with 68.75% of identity
• Eggnog: Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP (By similarity)(COG1400)
• Kegg: Link to kegg annotations (AT1G48160)
• CantataDB: Link to cantataDB annotations (CNT0000044)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463344.1)
• Pfam: SRP19 protein (PF01922.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;