Ll_transcript_400988

• Id Trinity: TRINITY_DN45201_c0_g1_i1
• Name Transcript: Ll_transcript_400988
• Sequence: CTCGGTGGATTTTCAATTTGACACAACATTTTCTCTAGTCGCAGAGAAAACGATATCCTCCATGTTAACAAAATCACAGTTACAGTGGTAAGTTAGTTTG ATATGTTTACTCTAACGCCCTCGTCTCTTTCATCCTATCACCACGATAACCTTTCCATTTATCACAGAACCACTTTGACAAGAAACAACAACCCTTTTTC TTCGATTCCCATTCTAAAATCATCCTTATATCTCTCATTACATACCAAATCAGAGTCACGCACCCATACCCAGGCCCAGGCCCAGGCCCAGGGACCTTAT CTTCAACAACGCTTACACAAACTCTGTTCATCTGGGAAACTCGATGAAGCACTCAAACTACTCCAATCACAGTTTCATAATTTCTTTTCAACTTCAGAAG CTATTAGGACATTGCTTCAGGCATGTGGGGTCCACAAGGACATTGAAGTTGGCCGAAGAGTGCACGCTATTCTTTCTGACTCTGTGCAGTTCCACAACGA CGTCGTTTTGAACACTCGGGTTGTTACTATGTACTCCATGTGCGGGTCATTTTCGGAATCTCGTAAAGTTTTTGACGGGTTTCAGAATAAGAATCTCTTT CTTTGGAACGCACTTTTAAGCAGTTACACCAGAAAGGGGCTTTTTCACAACACGGTTTCTCTGTTTATTGAGTTGATTTCTTCCACGGACTTCGCGCCGG ATAATTTTACGTTACCTTGTGTGATTAAGGCATCGGCAATGCTGTTGGACGTTGAATTTGGGGAAGGGGTTCATGGTTTTGCTTTAAAGGTGGGTTTGTT CATTGATACGTTTGTGGGTAATGCATTGGTTGCTATGTATGGGAAATGCGGTTTTGTGGAGAGTGCTTTCAAGGTGTTTGAATGTATGCCTGAGAGAAAC TTGGTTTCGTGGAACTCGATTATGTATGTATTTTTGGAGAAGGGTCTTTTTGAAGAGAGTTATGATCTTCTTCATCGGCTTTTGAACAGCGAGGAAGGTT TGGTACCGGATGTTGCTACAATGGTGACAGTGATACCAGTGTCTGCAGCACTAGGGAAAGTTGAAATGGGGATGCAACTTCATGGTTTGGCTTTGAAACT CGGCCTGAACGAGGAGTTGAAGGTGAATAATTCACTCATAGACATGTATTCGAAATGTGGTTACCTTTGTAAAGCACAAGTTCTTTTTGATGGGAATGTT AACAAGAACGTTGTTTCTTGGAATTCTATGATTGGTGGACACTCTAAGGAAGGAAATTGTTTTAGAACATTTGAGCTGCTGAGAAAGATGCAGAGGGAAG AAAAGGTTATGGTGGATGAGGTGACCTTGTTAAATGTTCTGCCAGCTTGTTTAGATGAGTCTCAATTGCTTAGCTTGAAAGAACTGCATGGTTATGCTAT TAGGCATGGATTTCAGAATGACGAATTGGTAGCTAATGCTTTTGTTGCTGCCTATGCAAAGTGTGGCTCATTGAATTATACTGAATGTGTCTTCTTCCAT GGCATGAAAACAAAAACAGTGAGCTCTTGGAATGCATTGATTGGTGCTTATGCCCAAAATGGTTTTCCACAGAAGGCTTTGGACATTTACTTTTTAATGA CAGATTCTGGCTTAGATCCAGATTTTTTCACAATTGGCTGCCTTCTTCTAGCCTGTGCGCGCCTTAAATTTCTACGCTATGGCAAAGAGCTTCATGGATT TATGTTGCGTCGTGGTTTAGAATCGGATGAGTTTATCGGGATATCATTGCTGTCACTTTACATTCACTGTACCAAAACATTACTAGCAAAACTATATTTT GAGAAGATGCTAAAAAAAAGTGTAGTGTGCTGGAATACAATGATTACTGGCTTTTCTCGGAATGAACTTCCTTCTGAATCCCTGGATATGTTTCGTCAAA TGGTTTCGAGTGGAACTCAGCCTCATGAGATTGCCATAACAGCCGTTCTTGGGGCTTGTTCGCAGATGTCAGCATTGCGTTTGGGGAAAGAAGTTCACTG CTATGCACTGAAAGCTCATCTTACTGAGGACAAATTTGTTACTTGTTCACTAGTAGATATGTATGCAAAATGTGGATGTATGGAACAATCTCAAAACATT TTTGACAGGGTAAATGTGAAATATGAAGCATCATGGAATGTCATAATTGCAGGATATGGAATCAATGGGCATGGACTGAAGGCTATTGAGATGTTTGAAC TAATGCAACGCTCAGGCTGCAGGCCAGATTCTTTCACATTTATAGGAGTGCTAACCGCTTGTAACCATGCTGGTTTAGTAACAGAAGGGTTAAAGTATCT TGGTCAAATGCAGAGTTTGTATAAAATAAAACCAAAAATAGAGCATTATTCATGTGTGGTGGACATGCTTGGTCGGGCAGGACATCTAAATGAAGCTTTA AAGCTTTTAAATGAGCTACCATATGAACCAGATTCTAGGATATGGAGTTCATTGCTTAGTTCTTGTAGGAATTACGGTGATTTGGATGTTGGCGAAGAAG CCTCCAAAAAGTTATTGGAGTTGGGGCCAAATGAAGCTGAAAATTATGTGCTGCTATCGAACTTATATGCTGGATTAGGAAAATGGGATGACATGAGAAA GGTGCGGCAGAGGATGAAGGATATTGGCATTCAGAAAGATGCAGGTTGCAGTTGGATTGAAATAGGAGGAAAGGTTTATAGATTTCTTGTTGGTGATGGA TCAGTTTTGGAATTAAAACAAATTCAGAAAACTTGGAGTAAATTGGAGAAAAAAATAAGCAAAATTGGATATAAACCTGATACAAGTTGTGTGCTTCATG ACCTGAAAGAAGAGGAAAAGATTAATATACTTCAGAACCATAGTGAGAAGCTTGCAATTTCTTTTGCCTTATTAAACACAGCTAAAGGTTCAACTCTGAG GGTTTACAAAAATCTACGAATTTGTGTTGATTGTCACAATGCTATTAAATTAGTATCTAAGGTTGTAGAAAGAGAGATTATTGTAAGGGATAACAAGCAC TTCCATCATTTCAAAGATGGATTTTGTTCCTGTGGAGATTATTGGTAGCTGAAGGTCCATATTAGTTTTAACTCAGCAATTTGCATGAGTAAATGATGCC AGAAAATGTCAGTGGTCTTCTGTGAAACTCTTGCTTGTCTTCCACGTCATACAGGTCTAGAGCTGTAAAGACAAGATATTCTCTGGGCCATAACTAGAAG AAAAACATGCTATGCAAAATATATCCTGTTTTCTGACTTGTATAACATCTAACTTCAATTTTTTCCAGTGTTACATGACAAGTGATTGCATATCGTAAAT ATAAAATATGAATGGAATTCTAAGCTACCCCAGGGGTTTCTAATCCCAAGTAATGTAACATCATAGCTGCACTTTGATTAGAGAGATGGTGTTCTATCGT TTCCTGTAAATTCTTAATTCGTCT
• Tissue: pods
• Gene name: LI_gene_139132;
• Additional information: details;

Expression of Ll_transcript_400988

FPKM

• PAB: 0.2
• PNAB: 1.3
• PS1: 1.3
• PS2: 0.8
• PS3: 1.3
• PW1: 0.8
• PW2: 0.6
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_400988

• Blastp: Pentatricopeptide repeat-containing protein At1g18485 from Arabidopsis with 54.55% of identity
• Blastx: Pentatricopeptide repeat-containing protein At1g18485 from Arabidopsis with 54.55% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT1G18485)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019437138.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;