| Id Trinity | TRINITY_DN45216_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_400938 |
| Sequence | TAAAGCTTACCAATCAAATAATTAAAGTAAAAAGTAATTATTAATATGTTTGTGTGTTGGATTTTTTTTATTAAAACTTTAAAACTTTTTGATCAGAAAG CAAATTAATTATTTTCATATAGAAATTTTGTATATAAAGAAAAAATCGATTTTGGCGAAAGCAAGAGCATCCTCAACACAACACTGCTTTCCCTGAAGCG CCGTTTGCTTTGCACTACTTGTTCTTTTTATTCTCCATTTCTACACTTCCTTTTTCTCCTTTTTATTTTATTTTGAAGGTATCCTTTTCTTTTTGTTTCT TTCAATTCTTAATTTGCAACCAATCCCATTTCCCATTTCCACACCCCTTTTCGTCATTATATGATGTTGTTGTTTAGGTTTATGAGTACTTACTTCTATG TGTTTGATAAAATGTCTGACTTAGGTTTTTGCTGGGAATGTGTTTTTTTTAGTTTATATTCTGTGTTTTTTGGGTATGATTTATGAACCTAACCATTCAC TTTTCTGTTATTCATTTGGTTTAAAGCTACAATCTTGTGCATAAGGGTCGTTGAATAGTGTATTTGAATCTGGAACACGGTTTTTAGTTTTACTCGGTAG AGCAATGACAGATTTTTTGTGCATTCTGAGAGTATTATACCCCATGGATCAAAAAAAATATATAACACTTGAATTGTGAAATAGTTTTAGAAGTACTGAA CCTGTAGTGAAAACTTTAATTTTTTTCAGTTTGGTGTCCCTTAAATTTTGGGGTTTTCGTATTGATCTTATTGATATAATTTTCACCTTTAATTTGGGAA TTGGATCTTTGCTTTTGTTTTGTCCATGAATGATGAAAATGTAATTGCAGAGTATAAAGAACTAGAAAAGAATATGAATAAGGATAAAATCTTCAAGCTT GCAAAGGGCTTCAGGGGGAGAGCTAAGAACTGCATAAGGATAGCAAGGGAGAGGGTGGAGAAGGCCTTGCAATATTCCTACAGAGACCGTCGTAACAAAA AACGTGACATGCGATCCCTTTGGATACAACGGATCAATGCTGGAACCCGCCTTCATGGTGTAAATTATGGAAACTTCATGCATGGGCTTACAAAAGAGAA TATCCAACTTAACAGAAAGGTCCTGTCAGAGTTATCCATGCATGAACCATATAGCTTCAAGGCGCTAGTGGATATATCGCAGAAGGCATTTCCAGGAAAC AAGAATGTGGTGATTCCTCCAAGAAAGGTGAATTTGTAGAGCATTTGGCTCTTAACCAAACTATTAGATTAGAGCTAAGTTTCTATCAGAATTGGTAAGG ACCTTTCAGGATTTTGGGTTTGGCACCCTACAATTTATTGTAAACTTGCATGCCTTTGATTCTTGTGACCATGTTGAGTACTGTTGTGGTCTTGATGTTA CTCCTCCAGCCTCCCTTTTACTTGCTTCAGTATCAATAATTGATCAAATTGTTGCCATTATTAGACTCTATCAAAAGCTGAGATTTCACATTAGTTGGTT GTTTTGCATTTACAAATTTCAACTTGGTTCTGAACCCAAAATGACATTTTAGAATTGGTAAGTACAGACATTCACATTTACAGAAGGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_139154; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_400938
| Blastp | 50S ribosomal protein L20 from Rhodospirillum with 64.42% of identity |
|---|---|
| Blastx | 50S ribosomal protein L20 from Rhodospirillum with 64.42% of identity |
| Eggnog | Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity)(COG0292) |
| Kegg | Link to kegg annotations (RC1_2313) |
| CantataDB | Link to cantataDB annotations (CNT0001777) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459247.1) |
| Pfam | Ribosomal protein L20 (PF00453.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |