Ll_transcript_401028

• Id Trinity: TRINITY_DN45219_c0_g1_i1
• Name Transcript: Ll_transcript_401028
• Sequence: CGAATATTTAAATATTATTACTACTTTTTATATATTTTCAGCATTCATATTAATCTCCAAATTTTTATGGTTAAAAATAATATTAGTACTTTTTATTTTG TTCTATTTTCCATTATAAAGAGAAAGTCAGAAATTATAAGGACGAAGACCTAAATTGATAAAATAAAATTAGCCGAACTATTTTTGAAGTAGTGCTAGTA GCCTCTCCAATGGCGGAACACAACGAAGCCACGAATGACATAACCGAACCCGAGTTGACACATGTTGCTGAAAACCCCGCCATCAACGAAAACGACGCTC CATGCGACTTAAACGGCGTGCTACAATCTCTGCCTTCCAACGTCATCAATGACTTGTTATCCTTCGGGATATGTGTCCGATGCATTTTTCGGGTATTTGG TGTCAGAGGACGCATCTATGCCTCACCAGATTTGGCAGTGAACAATCTGAAGGATAATTTGAAGAGCTCTGAAAACTCAAATACTGCAAAGGAAACTAAG CTTTGCAGGCTTTGCTTAGGGATACTGCAGTTTAGATTTGTTGATGAGAAGGAAGTGGTGGTGAAAAAAGATAGTGTTGATGATATGGCTGTACTAATTG CTGAAATGGTAAAGAAGGAGGGTTATCAGATTGATGGTTTTTCCTTTGAAGTTTCTGTCCCACCTGTTCTACTTGAAAATGATAACTCGTTTTGGTCATA TATGAAATCAAAATTTGGATCTGAACCTTGGTTCCAAGAAAAGTTACATACTGAACGTATCTCTACAAAGGATGCATTAAAATTTTCACTAGTATCTCCT CTTGAAAATCTTCTGGTAAGTAATATTTCTTTCCCACATGTTTCATACATTGTCTCTTGGAAGATTTGTTTTTTGACACAACAACATCATTGTTTGATCC ATGTAGTTGAAACCATTTATGGGGTAAAAGGCTTTGGTTGTTATTGTTCTACATGTTTCATCAAGTGAAATGGCAGGCTTAGATTTTGCTTGCTATTTCA CTAACAATATCTTTAGCAATGGTACTAGTCACAAGCCTGTGGCTCATCAGAATAAAATTACTGGAACTTGAATATACCTCTTCTCGTTATAAGCCAAGAC TTTAAATCTATTTGTTTTCTTATAACCCTTCACAGAAATCAAGTTTTGCAGGACTGTAAATCAAATATGAGTTCTTTCCGCATTCGTTTAACATACAATC ACACTAAAGGATTGAATGGGACTGAGAAATGTTCAGACAACGATGAGCGTTCCAAGAGAAGAAAAACAGGTGAATCCAATTTAGTTGGAGAAAAGCCTTT TAGCAGTTCGGTAGAAAATGAATCCTCTGACTGGTGTGAATCCTTGCAAGAAATGGCAAATGAACCCTGTCATTTTACCTGCGTTTTCTGCAGAGAACCT TACTATTTTGGTGGAAGATACCTTAAGTATTCACGAAATGTGAGTCAGACACGCTGGATCATTGATGATGAGAGAATGGGTGAAGCATCAGTTGAGGAAA TAATTGGCGGAAACATCCTCCAGGCATCCCGTGGTGATAGTTTTAAGTTTCACGCTGCCGGCAGAGAAGATATCGATGTACGTATGCTGGGCCCAGGCAG GCCTTTCCTTGTTGAGGTGCAAAACGCACGACTTCTCCCGTCTGAACTGTTCGCCAAAGATATAGAGAAATTGATAAATAACGTGGAAAATAAATTGGTT AGGGTGAGAAATCTGAATCTCGTTGGTAGTCATGGCTGGAACCTTATGCGTGAAGGTGAAGCAGAGAAGCAGAAGCAATATGCTGCTCTAGTGTGGATTT CTCGCCCTTTGAAGGATGAAGATTTGCAACATATTTCTTCACTCAAGGATTTGAAAGTTTTGCAGAGAACCCCTATAAGGGTGCTACACCGTCGCAGTCC TTTGGAGCGTGAAAAGATTATCCACTGGATGAAAGTGGAGACAATTGCTGGAAGTTCGCAATATTTTCTTTTGCATCTATGTACACAGGCTGGGACCTAC ATCAAGGAATTTGTTCATGGGGATCTTGGTCGAACCCAACCTAGCATTGGATCAATTTTGGACTGTAGAGCTGAAATTTTGCAACTTGATGTTACAGACA TCAAAATGGACTGTTTCCTGGCCTAGTAAGGTTATCTCCTGTTTTCAGTATTTAGTTGATTGATTTTGGAATGAGCAGTGCTCAGATGAAAGACACTTGA GTATCTTCAACTTGAGCTTTGTTTATTTAGTATCTAAAAGATGTTCTCAGAATTAGTAACTTGAGCCTCTTATTAAGGTCTCTATGCACACTTGAGGAGT CCTGAAGAAGAACAAAAGCAGTCATAACTTTAATTTTATTATAGTGATTGAGAATAGATTTTGATAGTGAAGCCTCAAGAATGGTTCTTAAGTTTTTCAT GTCTCAAATGCAGACTTGCTTTTAAATGGTTAAGCCCTGTAGAGAACCTGCTGGAGTAAATTGATGCCTTTTAAACAGAAAATTGTTCACCCAAAAAATA TAACAGTTCAAACACCAAAGGCTATACCCCCTTGAGATCGGGGTTAGTTAAAGGAACATGTGTGAAACCTTCAACTTAATTAATCAATTAAGTTGAAGGT TAAGGTTTCTAAGTCTCCTACTTGCAGAGGAGAAAATGAGGGTGGGGACAAATGGATATATAGACAAGAGGAAATTCAATAAACATGAAGTTGATAAATT TACATATATTGATATTAATATTATTGCAATCTTACAGTGCTCTT
• Tissue: pods
• Gene name: LI_gene_139160;
• Additional information: details;

Expression of Ll_transcript_401028

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.2
• PS2: 0.4
• PS3: 0.3
• PW1: 0
• PW2: 0.2
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_401028

• Blastp: Putative tRNA pseudouridine synthase Pus10 from Homo with 48.1% of identity
• Blastx: Putative tRNA pseudouridine synthase Pus10 from Homo with 48.1% of identity
• Eggnog: Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (By similarity)(COG1258)
• Kegg: Link to kegg annotations (150962)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449496.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;