Ll_transcript_401033

• Id Trinity: TRINITY_DN45219_c0_g1_i6
• Name Transcript: Ll_transcript_401033
• Sequence: CGAATATTTAAATATTATTACTACTTTTTATATATTTTCAGCATTCATATTAATCTCCAAATTTTTATGGTTAAAAATAATATTAGTACTTTTTATTTTG TTCTATTTTCCATTATAAAGAGAAAGTCAGAAATTATAAGGACGAAGACCTAAATTGATAAAATAAAATTAGCCGAACTATTTTTGAAGTAGTGCTAGTA GCCTCTCCAATGGCGGAACACAACGAAGCCACGAATGACATAACCGAACCCGAGTTGACACATGTTGCTGAAAACCCCGCCATCAACGAAAACGACGCTC CATGCGACTTAAACGGCGTGCTACAATCTCTGCCTTCCAACGTCATCAATGACTTGTTATCCTTCGGGATATGTGTCCGATGCATTTTTCGGGTATTTGG TGTCAGAGGACGCATCTATGCCTCACCAGATTTGGCAGTGAACAATCTGAAGGATAATTTGAAGAGCTCTGAAAACTCAAATACTGCAAAGGAAACTAAG CTTTGCAGGCTTTGCTTAGGGATACTGCAGTTTAGATTTGTTGATGAGAAGGAAGTGGTGGTGAAAAAAGATAGTGTTGATGATATGGCTGTACTAATTG CTGAAATGGTAAAGAAGGAGGGTTATCAGATTGATGGTTTTTCCTTTGAAGTTTCTGTCCCACCTGTTCTACTTGAAAATGATAACTCGTTTTGGTCATA TATGAAATCAAAATTTGGATCTGAACCTTGGTTCCAAGAAAAGTTACATACTGAACGTATCTCTACAAAGGATGCATTAAAATTTTCACTAGTATCTCCT CTTGAAAATCTTCTGGACTGTAAATCAAATATGAGTTCTTTCCGCATTCGTTTAACATACAATCACACTAAAGGATTGAATGGGACTGAGAAATGTTCAG ACAACGATGAGCGTTCCAAGAGAAGAAAAACAGGTGAATCCAATTTAGTTGGAGAAAAGCCTTTTAGCAGTTCGGTAGAAAATGAATCCTCTGACTGGTG TGAATCCTTGCAAGAAATGGCAAATGAACCCTGTCATTTTACCTGCGTTTTCTGCAGAGAACCTTACTATTTTGGTGGAAGATACCTTAAGTATTCACGA AATGTGAGTCAGACACGCTGGATCATTGATGATGAGAGAATGGGTGAAGCATCAGTTGAGGAAATAATTGGCGGAAACATCCTCCAGGCATCCCGTGGTG ATAGTTTTAAGTTTCACGCTGCCGGCAGAGAAGATATCGATGTACTAAAGATTTTTTGTTCTGGTCTCTTTAATTGTATCAGTGATTGAACTTTGTGATA TGGAACTATTCTTCTAGGTACGTATGCTGGGCCCAGGCAGGCCTTTCCTTGTTGAGGTGCAAAACGCACGACTTCTCCCGTCTGAACTGTTCGCCAAAGA TATAGAGAAATTGATAAATAACGTGGAAAATAAATTGGTTAGGGTGAGAAATCTGAATCTCGTTGGTAGTCATGGCTGGAACCTTATGCGTGAAGGTGAA GCAGAGAAGCAGGTCTTGCATTTTGCTTAATAGTATACTTTCTTTTATAGTTCAAGTTCAAGGTTTACAACTTTCTTCATCCTTGTGATTACAATCTAAA AATTCTACAGAAGCAATATGCTGCTCTAGTGTGGATTTCTCGCCCTTTGAAGGATGAAGATTTGCAACATATTTCTTCACTCAAGGATTTG
• Tissue: pods
• Gene name: LI_gene_139160;
• Additional information: details;

Expression of Ll_transcript_401033

FPKM

• PAB: 0.1
• PNAB: 0.1
• PS1: 0.3
• PS2: 0.2
• PS3: 0.3
• PW1: 0.3
• PW2: 0.3
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_401033

• Blastp: Putative tRNA pseudouridine synthase Pus10 from Mus with 27.68% of identity
• Blastx: Putative tRNA pseudouridine synthase Pus10 from Mus with 26.55% of identity
• Eggnog: Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (By similarity)(COG1258)
• Kegg: Link to kegg annotations (74467)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449496.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;