Ll_transcript_400643

• Id Trinity: TRINITY_DN45240_c0_g1_i4
• Name Transcript: Ll_transcript_400643
• Sequence: GTGAGTTAGTTGACACAAACCTTTGTTTATGTTATCTTAAACTATTTTGTCTAATTCTCATATTTCTGTTGTGAACTGTTGAATTTCTGCATTATCATCT TCTCTCCAATGTGCACACAACAGCTCCTACCTCTTCCAACCCATAAACCCTTCTTTCTCAGTCCAATTCCAAAAACCTCATCTTTTCATAAATTGAATTC TACCCAAAATGATGAAAACAGTTACATTCATAAAAGAATGAAAACAATAAGTTTGGAAGAACTTCCCCCAAATGCCCTCAGGAGAAAGACAGACCCAAAT TGGAGAGGAGGCTTTAGTCTTGGCCTTGATTTGGGATTGGCTCGAACTGGTCTTGCCCTTAGCAAGGGCTTCACTATACGCCCTTTAACGGTTTTGGAAC TGCGAGGACAGAAGCTTGAGGTCAAGATTTTGAGCATTGCCGAACACGAGGAGGCTGATGAGTTTATAATTGGGATTCCGAAATCTTCTGATGGGAAGGA AACACCGCAATCAAACAAAGTCCGTAGTGTTGCAGGCAGGCTCGCTGTTCAAGCTGCTGAGAGGGGTTGGAGAGTGTACCTACAGGATGAACATGGGACC ACAACAGAAGCGTTAGATCGGATGATCAGATTGGGCCTAAGTAAATCCTCCCGGCAAGGGAAAATTGACGCGTATGCTGCGGTGATGGTACTGGAGAGAT ATTTCTCAACATCAGGTCGTGATACTGAACTTGTTTTGCCAAAAAGCTCGGAACTACAAGGGAAACTCCGAAGGGGTCCTCCGAAGGATTTAGATTTCTA CTCAGATGAAGACTAATCACAGAGAAAATTCCTTTTGTCGTTAGCTTCCGCGGTGAATTCGAATAGTTGTGCCTGGGAGGGTAGCATGGAGAGAATGGCT ATTCACGGCATTGAAGTTATTGTAAAGCAATATTTACAATAACATGGATACAGTGATTGTGTATAAATCTTTATATTGACAGTGCATAGATATTATACTC TATCTATTTATTTATAATAGTACATATTATTCGGGTAGGTTGTTGTAAATCAACAGCATCTGAACTTGGTATGTTAAGAAAATGAGACTGCATATGGATA ATGCTTGTGTAACAAAACTAGTGCCAAAAATGTGAGAGGATGCTGTGGAGGACACTATTTCATACCCTATCAGCTATCTAATAGTTAGTCTGTAAAGGTT TTTGTACTTTTTGTGGCTAATAATTTTGTGGCAGTAGCATTAGTGATGG
• Tissue: pods
• Gene name: LI_gene_139200;
• Additional information: details;

Expression of Ll_transcript_400643

FPKM

• PAB: 0.4
• PNAB: 0.2
• PS1: 0.6
• PS2: 0.5
• PS3: 0.3
• PW1: 0
• PW2: 0.5
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_400643

• Blastp: Putative pre-16S rRNA nuclease from Shewanella with 31.06% of identity
• Blastx: Putative pre-16S rRNA nuclease from Shewanella with 31.06% of identity
• Eggnog: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination (By similarity)(COG0816)
• Kegg: Link to kegg annotations (SO_3347)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463335.1)
• Pfam: Holliday junction resolvase (PF03652.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;