| Id Trinity | TRINITY_DN45247_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_400959 |
| Sequence | AAGTCTAATATTGCTTTGATGGCGTCTGATTTTGAATGTCTCGTAAGCTACGCTACATTTTCCCTAACTTGTTAAGCCCTATATAAAATACTCATGCTTC ATGCTATAATCACAACTTGCATTGTTTAATGTTTATGCAGATATCTCAATATTCTTTGAAGGGCTTTGTTATTGGTATCCCTTTTGATAGACATCGTGTT TCGGCTGATGCTGTGCAAGTCAAGGCCTTCATTAATGACCTCTCTAGTACTAAAAAGCTGCAAGGTATACCATATACATATTGGAATGAGCGCTTCACTT CTAAGAACGTGGAGTTGTTTTTAAAGCCTCTGGACTTGTATCATCCCTATCATTCCAAGACTATGCTAGACAAGTTTGCTGCTGTAGGAATACTTCAGGT AAGCTCTTTGATCTGCTTCTTAACACAATCTACTATTTTCACTGTTTTACTTATCTTTCTCATGTTACCCATTGTGGAAAAGTACATGTCTTCACTTTTC ATTTGCAATTGCACTGAAAGCATAAGAAGAAAGCATTTAGGCCTCTAATTTATGCATTTTCCACTGAAGTAGGAAGTAAATTATTTGTTTTTAGAAATTC ATTGGAAGTAATTTAATGCTCATGAGATAAGTGACTGTTATCCCTGCAATTATCCATCTACATCCTCAACTTGATGGCCATCTAACCAGTTTATATACTA CACCAGTTAGGAGTTGGACTTAATTATAACAACAATAAAGTTTTAATCCCTTAAGTGGGTTGACTATATAGATCAACTTCTATCACAAATCAGTCCATTG ACAAAGTGTTAATTTCCAAATCTTTCTTAATAGTTTCTTCCATGGGTTTTCTTGATCTCCTTCTGCCTATATGAATTAGACTAAAGTTCATTTGATCTAC TCTACTTAATGGGGGATTCTGTTGGTCTCATTCACTTGATAAACCATTAATTTCTAAATCTTTCTTAATGGTTTCACTGATGGTTTTTCTTGGCCTCCTT TTGCCTCTACGAATTAAGCTAACTTTCATTTGATATACTCTTATTGGGGCTTCTGCTGGTCTTCTCGGCACATGCCCAAACCACCTAAAACAAGATTTTA CCATATTTTTTACAACATGAGCTACCCAACTTTCTTTTTAATGCATTGATTCCTAATCTTCTTTCTTTAGTTAGTCCACTCGTCCAATATTCAGTTTCAT ACAATATTGAAGACCTTAAATTTTTGTGGTAAAATTTCCTTTAAGATTGAACAATACATTCTTATCACATATTACCCCGGGACACACTCCTCCATTTCAT CAATCCTGCTTGAATCCTATTGTTTATATCCACCTCTATTTCCTTATCGTTCTGTTAGATTGACCCAAGATACTTAAACTTTGGGCTTTTGGTATGGTAT GATCTCAAATTTTCACCTCTATGGTAGGATTTGTGCTCCTCTTGTTAAACTTATACTCTATATATTCTATGGTAGTATTTGATCTCAAATTTTCTATCTT ACTTCGGTTGACTTGAAGGATTCAATTGAAAACTTTTACTTTTCATGAAGTCTGTTTATTTGTCCAATTGTCCTCATATGGAACCATATATGCACAATGT CTAGACATATTTTATATCACAGGTTATATGTCGAGTTAATTATTAAGGCTTAGTTTACATCTACTTACATGTTGGTGTTTTGTAGGGGTACCTGGATTAT GCTAACAGAAAGGTGAAGTTGGAAACGGAGTAGAGAGGCATTCTCCAGAAATCACATATACAAACCTGAGGACAAAAAAAACAAAGGCTTGAGGTTGTTC CAATTGAGCTGAAAGCTATTTTGTTAGTAGAATCAGTTAGTTCCACAAAAGTTTAAGCTCTTTTCTCCCTTGATAATATTTATGATATAGAATTTAGACA TTTTTTTGTAGGAGAGCAGTCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_139212; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_400959
| Blastp | Putative pre-16S rRNA nuclease from Syntrophomonas with 31.4% of identity |
|---|---|
| Blastx | - |
| Eggnog | Could be a nuclease that resolves Holliday junction intermediates in genetic recombination (By similarity)(COG0816) |
| Kegg | Link to kegg annotations (Swol_0470) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420916.1) |
| Pfam | Holliday junction resolvase (PF03652.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |