Id Trinity | TRINITY_DN45456_c0_g1_i2 |
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Name Transcript | Ll_transcript_469459 |
Sequence | GAAAATAATGTGGTAAAGATTTTGACGTTCCCGGTCTGAAATTGAATCTCAACCGGGTTGAACCATCGGCTTTCTCTTTCTCATTACAAAATATTAATTT TCCGGTAACAAACTCTCTCAGATCCCAACTCCATTTCCATTGAAAACAAAATCAAATCACTCTTCAATCACCGAACCAATTCATTTGAATCCAACAATGG ATTCATCACCAACCACACATTCTTCATCTTCACCTTCTTTCTCTTCCTTCATTCACCGAACCTCTTCTTCTTCTTCTCCTCTCTCCAAATCCAACTCCGA CGCTATTCAAAGCCTCTCTTCAATCCTCAACAACCCTCACGCCTCCGATCCCTCCGCCTCCTGGGTCCCCTGGTGGTCCTCCTCCGCCGCCCTCGCTCCT CCCGATTTCAACCCTATAACCGTCAAACCTACTTCTGAATTCACCCGATCCGACTTCGATTCGTTCTTGTCGCCCATTTCTGAACCCTATCATCGATTCC AAGACATTCGGAACCACGAGACGAAGGAGATCGATGATGCTGATGGAAACGGCGTCGTTTCGGGGCAGGGAGAGGCGTTAGTTGCGTGCCTACGTGAGGT TCCGTCGCTTTATTTTAAAGAGGATTTTCGGCTTGAGGACGGTGGGACGTTTAGGGCGGCGTGTCCGTTTTCCAATGTTTCGGAGAATCTCGCGCTGCAG GAGAAGCTGTCGCATTACTTGGATGTGGTGGAATTGCATTTGGTCAAGGAGATCTCGCTAAGGTCCAGCTCGTTCTTTGAGGCGCAGGGGCAGTTACAGG ACTTGAATGCTAAGATCGTGGAAGGTTGTAGCAGGATACGCGAATTGAAGGAGACGATCCGGCTCTTGGATTCGGATTTGGTTGAGAATGCGAGGCAGAT TCAGGAGCTCAATGGCACTAGGACTAACCTCTTGGTGCTTCAGCAGAAATTGAGGCTTATATTATATGTTAATCAAGCTGTGTCTGCTCTCAAATTGATT GTGCTGGAGCACTGGATGTAACTGATGATCTGCAACATTTACTGGATGGAGATGAGCTCACTGGTCTGCATTGCTTTCGTCATCTTAGAGATCACGTTAT AGGCTTTATAGAGGCCATAAACAGCATTCTTTCAGCAGAGTTTGTTCGAGCTTCCATACATGATGCTGCAGAAACAGATGTGATGATTTTATCCAAAGCT AAAGCAAGGGCTTCCCTTCCAATGAATGGAAAGGATGACGAAGTAAAGTTGCAAGAAGAAGACACCGCTAATTTCAAAGACCGTCTTCTTCCTACCGTAC TTGGATTGCTTAGAACAGTTAAACTTCCCTCTGTTCTTAGGATCTATCGAGATACGCTAACCGCTGATATGAAGAGTGCGATTAAGACAGCTGTGGCTGA GTTGCTTCCGGTTCTTGCTGCTCGAGGTTCAGATTCAGAGTTCTTTTCCGGAGACAAAACTGTAGATGCAGATGGTGGAGGTGCATCACTTGCTAGCAAG TTGAGGAGCTTGTCATCTGATTGCTTTGTGCATCTTCTGAGTGCTATTTTCATGATAGTACAGGCACATTTAGTGCGGGCTTCTGAAGTGAAAAAGGCCA TTGAATGGATTTTGAGCAACTTTGATGGCCATTATGCTGCTGATTTAGTTTCCCCAACAATTGCGCATGGTTCTGCAGCCTCAGAAATATCCCAAGAAAG TGAGGTTCATGGTACTGCCTTTTTACCTTATTCACCTCAGCGGAGTGTTGCCAAGGGTCCTACTTTTCCAGGAAAAGCAATTGATGCCACAAGCTCCTCT AACATGTCAAAGAATTTCAGAGCTGATGTATTGCGGGAAAACGCAGAAGCTGTCTTCGCAGCATGTGATTCTGCTCATGGAAGATGGGCGAAACTTCTTG GAGTCCGTGCAGTTCTCCATCCTAGGTTGAAATTGCAGGAGTTTCTTACGATATACAACATCTCCCAGGAGTTCATTACTGCTACGGAAAAAATTGGTGG GAGATTGGGATACAGCATCCGTGGGACACTGCAGTCACAAGCCAAGGCTTTTATTGACTTTCAGCATGACTCTCGGATGTCAAAAATTAAGGCAGTGCTT GACCAAGAAACATGGGTGGAAATAGATGTGCCTGATGAATTTCAAGCTATCATCAATTTACTTTTTTCAAATGATGCATTAACTTCTGAGAACCTTAATG GTTCTGAGGATGATAATTCGACAAGTTACAATGATGCTCAGCCGATTGCGTACACTGGACAGTCAAATGATGAACAGAATAATTCCATTGAAGCATCCAT TAGCAATGCTGCATCAGATAGATCCAAACCCCTGGATCAGCCAACAGAAAGAAATAGAGGTCATAGTAGGACTCTATCTGCACAGAGTAACCATACTGAC ACAAAAGACAATAAAAAATCTATTTCTCAGGCTCTTTTCTACAAAGGTGTTGGTTATCACATGGTGAACTGTGGCTTAATATTGCTAAAGATGCTATCTG AGTACATTGATATGAACAACCTTTTGCCGTCACTATCTTCAGAAGTTGTTCACCGTGTAGTGGAAATCTTGAAATTTTTCAACACAAGAACTTGTCAACT AGTGCTTGGGGCTGGTGCTATGCAGGTGTCTGGTTTGAAGTCCATCACTTCTAAACACTTGGCGTTGGCGAGTCAAGTCATTAGTTTTATCCATGCTATT ATTCCTGAAATTCGGCAGATTCTTTTTCTAAAGGTGCCAGAGACTAGAAAGATGTTATTGGTTGCTGAGATTGATCGAGTTGCTCAGGTAATTGCTATAT ATTTTTGCTACTGACACTTTTATTCCTTTGATGGACGTAGACATATTCAGATGCAATCTTTTTTTGGATATTTCATTTTTGAATGTTTCATTTGTTGGAA ATTATTGCATCCAGTTGATCCTTTTTCCTGGAACTGAATTCTCTAGCCCTCAATGATTTTTTTCACGGTAAGGTTGCCTCTCTTGACACCTGGAGGTCAT GGGTTCAAATCATGGTAACGGCCTATTCACTTGCAAGGGTAAGGCTGCATACATCTACCGTCCGCAGACCCCTCTAGGTGGGAGTCTTGTGAATTGGGCT GCCCGTTCTTTTTCTGCACATTTGCCCCTACTGTTATTGTCTAGTTCTCTTATTCCTTAATTTGTATTCCTTTCTTCCCTTTCTTTCCTTACTCTCCTTT GTTATTCTGTTTATTGTTATCTTTACCTAACACATGCCTCTTCTGTATTTATCTCTTATTCACAACTTCGTGATGTGGATGTTTTTTAAGTGGATTTTGA GAATGAAGATGGGTTTTATTTTTCCTTGAGTGTCCAAGCATAATGATAAAACTTCAGTTCTTAGGGTTTGCTTTTGGTGATAATCTCTTGGGCTTGTAAT TCTTTTTAGTTTCTTTTTTTTAGGATACCTTTTGGTTCTTAGTTTTATTTTCAGAATATTTCTCTTGTAACATTGATTACCATTGCATTTTTTGTGGTTT CATTCCAGGATTATAAAGTTCACAGAGATGAAATACATACTAAATTAGTTCAGATTATGCGAGAAAGGTTACTAGTCCATCTACGTGGGTTGCCTCAAAT TGTTGAGAGTTGGAACAGACCTGAGGATGCTGACCAGCAGCCTAGTCAGTTTGCTCGGTCTCTTACAAAGGAAGTTGGATACCTACAGCGTGTTCTATCT CGAACTCTGAATGAAGAAGATGTTCAAGCGATTTTCAGGCAAGTGGTCATTATATTTCATTCACAAATTTCAGAAGCATTTTCAAGATTTGATATAAGTA CTCCTCAAGCACAAAATAGGCTATATCGGGACATCAAACATATTCTTCTGTGCATACGGTCATTGCCATCAGGTGATTTGAGTAAATCCGATACTGCAAA CTGGGGGCAGCTGGATGAATTCTCGGTACAAAGATTCGGGAGAGATACTGTTCAGTAAAGCATATTGTAAATTAGTAACTCAATTGCTTAAGTGGGAAGG CTAACCTACTTTGAAGATTGTGGGAGTGATTTCAACCTTCTTCACGTTGTTGCATTTTGGTGTAACACTGAGTTGAGGTGATGTTATTGTTACATTTTGT TAACTTATAGCTTATATAAATGGATCCTTGTTATCTTCTTAATCATTTGAACTTTGAGTATGGCTCCAGTTGGGATGCTTCGAGTCCTGTTCTTTCAATT TGAGATGAAATAATTCATCTCTACTGCTTTGATAATATACCCTTTTGTAAATAGGATGCCTAATTTTAATTTAATGTTCCTTGCAACAAATAATCAGGCA AACATACTTGAACAAAGAAATTTCTGAACATTATGAAATATCCCTTCTGGAGATTTCTAATTTTTTACTTGTAGGTAGGTTGACAGTTGAATATATTAGT TTTAAACTTTCATGGTTTTCTGATTGTGCAAGTAGTAAAAAGTTATGGAAGTGGGACACATTCTTCTCTTGCTTGTTTTTAGTGGCACAATTTTGGCTGG GAAATTAGCTGAATCTTCACATAAGATTAAGTTATTTATTATCTCTGATTTATGAGTTGTGATAAGAATTATATACAAAAGCATTCCTTAGCTTACTAAA CCAGGATTCAGTTTGCTCTATGATTTCTTTCAGGCCTTCGATTGATCTGTGGTAGATATACAAGGTATTGTATCATTTCTGAGCATTGTGCAGCCATGAT TGGTTTTTTAACAGAAGTTTTGTAGCAATCACTGTTGATATTCAATTTTTGGTTTCTCCCCATAATTGTAATGTTAAGCTGAGAATAGATATGATTCTGT TGATGATTTGAGTTTCTTTTTTTCATTTTATATCTCTCTTTTGGTGACGGAAATCAATGCATCAGAATGTACACAATTTGAGAAATCTAGTGACATTACT AATCTGTGTTCTGTTCAAGTCAATATTTTCGGTTTCTCTTATAAAC BLAST |
Tissue | pods |
Gene name | LI_gene_139698; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_469459
Blastp | Vacuolar protein sorting-associated protein 54, chloroplastic from Arabidopsis with 62.71% of identity |
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Blastx | Vacuolar protein sorting-associated protein 54, chloroplastic from Arabidopsis with 63.38% of identity |
Eggnog | vacuolar protein sorting 54 homolog (S. cerevisiae)(ENOG410XQ3K) |
Kegg | Link to kegg annotations (AT4G19490) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019417145.1) |
Pfam | Vps54-like protein (PF07928.11) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |