Id Trinity | TRINITY_DN45456_c0_g1_i6 |
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Name Transcript | Ll_transcript_469463 |
Sequence | GAAAATAATGTGGTAAAGATTTTGACGTTCCCGGTCTGAAATTGAATCTCAACCGGGTTGAACCATCGGCTTTCTCTTTCTCATTACAAAATATTAATTT TCCGGTAACAAACTCTCTCAGATCCCAACTCCATTTCCATTGAAAACAAAATCAAATCACTCTTCAATCACCGAACCAATTCATTTGAATCCAACAATGG ATTCATCACCAACCACACATTCTTCATCTTCACCTTCTTTCTCTTCCTTCATTCACCGAACCTCTTCTTCTTCTTCTCCTCTCTCCAAATCCAACTCCGA CGCTATTCAAAGCCTCTCTTCAATCCTCAACAACCCTCACGCCTCCGATCCCTCCGCCTCCTGGGTCCCCTGGTGGTCCTCCTCCGCCGCCCTCGCTCCT CCCGATTTCAACCCTATAACCGTCAAACCTACTTCTGAATTCACCCGATCCGACTTCGATTCGTTCTTGTCGCCCATTTCTGAACCCTATCATCGATTCC AAGACATTCGGAACCACGAGACGAAGGAGATCGATGATGCTGATGGAAACGGCGTCGTTTCGGGGCAGGGAGAGGCGTTAGTTGCGTGCCTACGTGAGGT TCCGTCGCTTTATTTTAAAGAGGATTTTCGGCTTGAGGACGGTGGGACGTTTAGGGCGGCGTGTCCGTTTTCCAATGTTTCGGAGAATCTCGCGCTGCAG GAGAAGCTGTCGCATTACTTGGATGTGGTGGAATTGCATTTGGTCAAGGAGATCTCGCTAAGGTCCAGCTCGTTCTTTGAGGCGCAGGGGCAGTTACAGG ACTTGAATGCTAAGATCGTGGAAGGTTGTAGCAGGATACGCGAATTGAAGGAGACGATCCGGCTCTTGGATTCGGATTTGGTTGAGAATGCGAGGCAGAT TCAGGAGCTCAATGGCACTAGGACTAACCTCTTGGTGCTTCAGCAGAAATTGAGGCTTATATTATATGTTAATCAAGCTGTGTCTGCTCTCAAATTGCTT GTTGCATCTGCAGATTGTGCTGGAGCACTGGATGTAACTGATGATCTGCAACATTTACTGGATGGAGATGAGCTCACTGGTCTGCATTGCTTTCGTCATC TTAGAGATCACGTTATAGGCTTTATAGAGGCCATAAACAGCATTCTTTCAGCAGAGTTTGTTCGAGCTTCCATACATGATGCTGCAGAAACAGATGTGAT GATTTTATCCAAAGCTAAAGCAAGGGCTTCCCTTCCAATGAATGGAAAGGATGACGAAGTAAAGTTGCAAGAAGAAGACACCGCTAATTTCAAAGACCGT CTTCTTCCTACCGTACTTGGATTGCTTAGAACAGTTAAACTTCCCTCTGTTCTTAGGATCTATCGAGATACGCTAACCGCTGATATGAAGAGTGCGATTA AGACAGCTGTGGCTGAGTTGCTTCCGGTTCTTGCTGCTCGAGGTTCAGATTCAGAGTTCTTTTCCGGAGACAAAACTGTAGATGCAGATGGTGGAGGTGC ATCACTTGCTAGCAAGTTGAGGAGCTTGTCATCTGATTGCTTTGTGCATCTTCTGAGTGCTATTTTCATGATAGTACAGGCACATTTAGTGCGGGCTTCT GAAGTGAAAAAGGCCATTGAATGGATTTTGAGCAACTTTGATGGCCATTATGCTGCTGATTTAGTTTCCCCAACAATTGCGCATGGTTCTGCAGCCTCAG AAATATCCCAAGAAAGTGAGGTTCATGGTACTGCCTTTTTACCTTATTCACCTCAGCGGAGTGTTGCCAAGGGTCCTACTTTTCCAGGAAAAGCAATTGA TGCCACAAGCTCCTCTAACATGTCAAAGAATTTCAGAGCTGATGTATTGCGGGAAAACGCAGAAGCTGTCTTCGCAGCATGTGATTCTGCTCATGGAAGA TGGGCGAAACTTCTTGGAGTCCGTGCAGTTCTCCATCCTAGGTTGAAATTGCAGGAGTTTCTTACGATATACAACATCTCCCAGGAGTTCATTACTGCTA CGGAAAAAATTGGTGGGAGATTGGGATACAGCATCCGTGGGACACTGCAGTCACAAGCCAAGGCTTTTATTGACTTTCAGCATGACTCTCGGATGTCAAA AATTAAGGCAGTGCTTGACCAAGAAACATGGGTGGAAATAGATGTGCCTGATGAATTTCAAGCTATCATCAATTTACTTTTTTCAAATGATGCATTAACT TCTGAGAACCTTAATGGTTCTGAGGATGATAATTCGACAAGTTACAATGATGCTCAGCCGATTGCGTACACTGGACAGTCAAATGATGAACAGAATAATT CCATTGAAGCATCCATTAGCAATGCTGCATCAGATAGATCCAAACCCCTGGATCAGCCAACAGAAAGAAATAGAGGTCATAGTAGGACTCTATCTGCACA GAGTAACCATACTGACACAAAAGACAATAAAAAATCTATTTCTCAGGCTCTTTTCTACAAAGGTGTTGGTTATCACATGGTGAACTGTGGCTTAATATTG CTAAAGATGCTATCTGAGTACATTGATATGAACAACCTTTTGCCGTCACTATCTTCAGAAGTTGTTCACCGTGTAGTGGAAATCTTGAAATTTTTCAACA CAAGAACTTGTCAACTAGTGCTTGGGGCTGGTGCTATGCAGGTGTCTGGTTTGAAGTCCATCACTTCTAAACACTTGGCGTTGGCGAGTCAAGTCATTAG TTTTATCCATGCTATTATTCCTGAAATTCGGCAGATTCTTTTTCTAAAGGTGCCAGAGACTAGAAAGATGTTATTGGTTGCTGAGATTGATCGAGTTGCT CAGGTAATTGCTATATATTTTTGCTACTGACACTTTTATTCCTTTGATGGACGTAGACATATTCAGATGCAATCTTTTTTTGGATATTTCATTTTTGAAT GTTTCATTTGTTGGAAATTATTGCATCCAGTTGATCCTTTTTCCTGGAACTGAATTCTCTAGCCCTCAATGATTTTTTTCACGGTAAGGTTGCCTCTCTT GACACCTGGAGGTCATGGGTTCAAATCATGGTAACGGCCTATTCACTTGCAAGGGTAAGGCTGCATACATCTACCGTCCGCAGACCCCTCTAGGTGGGAG TCTTGTGAATTGGGCTGCCCGTTCTTTTTCTGCACATTTGCCCCTACTGTTATTGTCTAGTTCTCTTATTCCTTAATTTGTATTCCTTTCTTCCCTTTCT TTCCTTACTCTCCTTTGTTATTCTGTTTATTGTTATCTTTACCTAACACATGCCTCTTCTGTATTTATCTCTTATTCACAACTTCGTGATGTGGATGTTT TTTAAGTGGATTTTGAGAATGAAGATGGGTTTTATTTTTCCTTGAGTGTCCAAGCATAATGATAAAACTTCAGTTCTTAGGGTTTGCTTTTGGTGATAAT CTCTTGGGCTTGTAATTCTTTTTAGTTTCTTTTTTTTAGGATACCTTTTGGTTCTTAGTTTTATTTTCAGAATATTTCTCTTGTAACATTGATTACCATT GCATTTTTTGTGGTTTCATTCCAGGATTATAAAGTTCACAGAGATGAAATACATACTAAATTAGTTCAGATTATGCGAGAAAGGTTACTAGTCCATCTAC GTGGGTTGCCTCAAATTGTTGAGAGTTGGAACAGACCTGAGGATGCTGACCAGCAGCCTAGTCAGTTTGCTCGGTCTCTTACAAAGGAAGTTGGATACCT ACAGCGTGTTCTATCTCGAACTCTGAATGAAGAAGATGTTCAAGCGATTTTCAGGCAAGTGGTCATTATATTTCATTCACAAATTTCAGAAGCATTTTCA AGATTTGATATAAGTACTCCTCAAGCACAAAATAGGCTATATCGGGACATCAAACATATTCTTCTGTGCATACGGTCATTGCCATCAGGTGATTTGAGTA AATCCGATACTGCAAACTGGGGGCAGCTGGATGAATTCTCGGTACAAAGATTCGGGAGAGATACTGTTCAGTAAAGCATATTGTAAATTAGTAACTCAAT TGCTTAAGTGGGAAGGCTAACCTACTTTGAAGATTGTGGGAGTGATTTCAACCTTCTTCACGTTGTTGCATTTTGGTGTAACACTGAGTTGAGGTGATGT TATTGTTACATTTTGTTAACTTATAGCTTATATAAATGGATCCTTGTTATCTTCTTAATCATTTGAACTTTGAGTATGGCTCCAGTTGGGATGCTTCGAG TCCTGTTCTTTCAATTTGAGATGAAATAATTCATCTCTACTGCTTTGATAATATACCCTTTTGTAAATAGGATGCCTAATTTTAATTTAATGTTCCTTGC AACAAATAATCAGGCAAACATACTTGAACAAAGAAATTTCTGAACATTATGAAATATCCCTTCTGGAGATTTCTAATTTTTTACTTGTAGGTAGGTTGAC AGTTGAATATATTAGTTTTAAACTTTCATGGTTTTCTGATTGTGCAAGTAGTAAAAAGTTATGGAAGTGGGACACATTCTTCTCTTGCTTGTTTTTAGTG GCACAATTTTGGCTGGGAAATTAGCTGAATCTTCACATAAGATTAAGTTATTTATTATCTCTGATTTATGAGTTGTGATAAGAATTATATACAAAAGCAT TCCTTAGCTTACTAAACCAGGATTCAGTTTGCTCTATGATTTCTTTCAGGCCTTCGATTGATCTGTGGTAGATATACAAGGTATTGTATCATTTCTGAGC ATTGTGCAGCCATGATTGGTTTTTTAACAGAAGTTTTGTAGCAATCACTGTTGATATTCAATTTTTGGTTTCTCCCCATAATTGTAATGTTAAGCTGAGA ATAGATATGATTCTGTTGATGATTTGAGTTTCTTTTTTTCATTTTATATCTCTCTTTTGGTGACGGAAATCAATGCATCAGAATGTACACAATTTGAGAA ATCTAGTGACATTACTAATCTGTGTTCTGTTCAAGTCAATATTTTCGGTTTCTCTTATAAAC BLAST |
Tissue | pods |
Gene name | LI_gene_139698; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_469463
Blastp | Vacuolar protein sorting-associated protein 54, chloroplastic from Arabidopsis with 65.6% of identity |
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Blastx | Vacuolar protein sorting-associated protein 54, chloroplastic from Arabidopsis with 64.54% of identity |
Eggnog | vacuolar protein sorting 54 homolog (S. cerevisiae)(ENOG410XQ3K) |
Kegg | Link to kegg annotations (AT4G19490) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019417145.1) |
Pfam | Vps54-like protein (PF07928.11) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |