| Id Trinity | TRINITY_DN45472_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_469673 |
| Sequence | CTCCTCCCTCTGTCTCCGTCTAGTTCCTACTTCAATGCGAAGGGAGAGGGAACAATTTTTTTTACATAAACTAGAACGTAGTAGTTACCTCTTAGCATTC TATGTTTCTTTTTATTTTCGTGCATCATAACTAGCATTCAAATATTAGTTGCATTGCAAGAATTAGAGTTACACAGAGACAGATACAAAGATTGATTCTC AGACTCAAATTTTGTTATGATATGCATTTGGAAATCTCTGATATGTATCAAAGTCTTGGCGCACACCGCCTCCTATACCGCGCTCAAATATCTCAGTACG TTAAACTTGGCCTCATTGACAAAGCCATCAAAGTGTTCGACGAAATGTCCCAATCAAAATGCCGCGTCTTCAGCCTCGACTACAATCGCTTCATCGGTGT CCTCATCAAAGATTCACGCTACGACCTTGCTCACCACTACTACTACCGCCACGTCATCCCCAACGGTTTCTCCCTTACCCCTTTCACTTACTCTCGCTTC ATATCTGCCCTTTGCATTGAGAAAAACTTTACCCTCATTCAGAACCTTCTAGAACACATGGACTCTCTTGGATTTGTCCCTGATATTTGGGCTTTCAACA TTTACTTAAACCTACTCTGTCGCGAGAATCGGTTACAGGCAGCTTTGGAGCTTTTTTATAATATGGTGCAGAAAGGAAGAGAGCCTGATGTTGTTACTTA CACTATCCTCTTTGATGCATTGTGCAAGTCTAGGAGGTTTGATGAAGCCTTGAAGTTTTGGCGTGGTTTGATTGAGAAGGGATTGGTGCCAGATTATAAG GCGTGTGGTGCGCTTGTTATTGGTTTGTGCAGTGGGGGTAATGTCGATTTGGCTTATGATCTTACCCTTGGTGGGATTAAGTGTGGAGTGAAGGTTAATG TGTTGGTTTATAATGCTTTGATTAGTGGGTTTTGTAAAATCCGGAGAATTGATAAGGCGCTGGCGATAAAGAAGTTTATGGAGAGGAATGGTTGTGTGCC GGATTTGGTTACGTATAATATATTGTTGAATTATTGTTGTGACGAGGTTATGCTGGATGAGGCGGTGAGGTTGGTGGAAACCATGGAGAGGAGTGGAGTA GAGCCAGATTTGTATAGTTATAATGAATTGTTGAAGGGTTATTGTAAGGCTAATCAGATGGATAGGGCTTATTTGACAATGGCGAAGAGGATGCAGGTGA AAGGGATTTGTGATGTTGTTTCTTACAATACTCTTATTAGGGGATTTTGTAAGGCACGCCAAATGAGAAGGGCTTATGATTTGTTAGAGGAAATGAATAG AAATGGGATTCAGCCTGACTTGGTGACGTTCACGATACTTATAGATGCATTTTTGAGAGAAGGTAGTTCCAATGTTGCCAAGAAACTTCTTGACCAAATG ACAGGGATGGGTCTTCTTCCTGACAGGGTATTCTATACAACAATAGTTGATCACCTATGCAAGACTGGTAAGATTGATATGGCTCATAGCGTTTTTCATG ATATGGTGGACAATGGGATAAGCCCAGATGTGGTTGCATACAATGCCCTCATAAATGGGTTTTGCAAGGCTTCTAGAGTAACAGATGCCATGCATCTATA TGACGAAATGCAGGTGAAAGCTTTCGCTCCCGATGAGGTAACTTTCAAGTTGATAGTGGGAGGGCTAATAAAGGAAAATAAGCTTTCAGAGGCCTGTAGG GTTTGGGACCAGATGATGGAAAAAGGTTTTACACTTGATAGACATCTTTCCGAGACTCTAATCAATGCCATTAATTCAAATCGTGGTTCATGAACATGAC ATAGGTTTGTATTGTGATTCTCTCAATTTCATTACACCTTTCTTACCAATGGAAAACCTGACTAAATGTTTTCCTTGGATATGAAAGCTCTGCACAAAGT GTTGAAGTTGCTTTATTTCTGCAAGTAATGGCACCAATAAATCAGTTTATCCCATTTTTATGCTGCCCATGGTGCAATCCATACCTTTGCATGTCCCCTT GCTCTGATGTTTTGTTGGACATGACAGCCTCTGGTAAAATATTCATACTGAGGGCAGTTTTGTGATGGATTCTTGATACAAGTGGAAGTAGTTGTGCACA AGTTTTGTCGCATAAAGCCAACTGACTATTAACTTGGTAGATTGTATTTGTCAATACAACAGTGTGACTGTTTACTTTCTGGCCAGTGTTCTGTATGCGG AGTTATGTATCTGTTTCTCACCCCCACTGCAATGATATCAGTAATTGATGATTTTAGTAAATCCTTGACTAGTGGCAGCTCATTCAGATTGATTCATATC CAGCCTGGCATAACCGGAGCATTGACGATGACAAACATTCTATGGTTCTATACATATTAATAGCATAGGACCCTTCTCGGGATAGCAACTCTCAATGTTA GTAAATACACCATGTGCTTTACCAGGATGAACTTGGTAGTACTTACTATGCCTTCTACGATGCACTTCAGAGCACAAATTTGAACTTTGATGATGCACAT TCTTTGATAATATGACCTTGTTGTGACCTACATCTGGTTCCTTGAGACCTTGCTTTCTTGCAAATTCATGAACGACGACCTTTAACAGATTGATAGTTTA CTATTTGTGAATATTTCTGAGGTTTTATAGATCAATAGAGAAATATGGAAATAACAAGATCCACTAGGTAGGCTTATTTAGTTTTCAAAATTCATTTTTT CCAGATTCTGAAAAATTGATGCTGGTACAAGTTATGTGGGGGGCTCAGATCTTCACATATATGAATTATAATAATAAGAACACATATTTGTTGGATTATA CTGTTATTTTCAACTTGTGTGGCCAATATTAATACTGTTTTGGGTTGATTTTGATGCTTTGTCTGCATCTGCAGCATGGAATTTCAAGCTTCCTTAAAGA AATGTCACCCTAACTAACCATTACACTTATCCAAATTCTCCATATTATGTTCAAGAATAAGCTCAGCAGCCGGCATCTAAAATTTCAGCTATTCACTCTT TGGCGTGAGGTTGAGATAGCATGCAAAAGAGATACAGAATCACTTTCTATTAAAAAATCTCCAATGACCAATCTTTAAAGTAAAAAACAGAGACACATTG CCCCACATATACTTGGCTTATGATTGATACCTTCCCTTCACATTAGTCATCCTTGAAGTTTTCATGAAGTCATTCTCATTCCTTTTACATTTTAAATTGT TGTTTTGAAGTATTTTATCCTGGTTTCCATGAGCTTAGTATTGGCTTTCTATTTCTCTTCACTCTCCTAATACATTCTCCATAGAAACCATGAATAGCCG GGAGACCAACCCTCATTTTTCTAGACCACGACATGGGCATCAAGATCACCAGCAACTGCCTATTCTAACAGTGCCAAACCAAGAACACCATGGCCAACCA CCACCATCACTGCCACTTGGAGTTCCACCACCTATACAGCAAGAAGACCAACCTTACCATCCTCATTTTCCTTTGAACCCTCAACAAGAAGATCAACCTT ACCGCCCTCATTTTCCTCGGCAACAACGAGATCATCAGCAACCACAAATTTCACAAGTACCATCCCGAGAAAAGCGTGGTCGAACATCACGTGGAGGTAC AGGTAAACAACGTGATGATCAACCTTACCTCCCACTCGGAGCATATGGTGGTGAACCACAATCACAAGAAAAGCATGATCGAATACCACGTGGAGGTGCA CATACAGAACAGGAAGATCAACCTCACCCAGTACCACAAGAACACCAAGACCAACTACCACATGAAGGTTCACATAAGCAACACGAAGATCAACCATACC TGATACCCAGAGCATACGGTGGCTGGCCACCACGCAAAGCACATATACAACATGAAGATCAACCTCACCAATTGGCCCAAGAACGCCGTGGCCAAAAACC ACACGAAGGTGTACCACCACGGGTAAATTTTCAAGAGCAATCCCCCAAGCCTCCTGGATCTTCAATGCAACCACCACCAAAGCGTCACCATGGACACCAT AAGAAGCCAGACCTTGGGCGCCGTCCTCTGAATATGGGAGAGGATTCATCACAAAAATCCAAAGCTTGTACCTGGTGTGGTATTGTCTTTTGTTTAATAT TTTGGCTTGTCATAATTATAGGAGGATTGATAGTCCTTATAGTGTACCTTGTTTTTCGTCCCAAGAGTCCCCATTTTGATGTGTCTAGTGTTACCTTAAA TGCTGCATACCTTGACCTTGGTTATCTACTTAATGCTGATGTTACATTGCTTGCAAACTTTACAAATCCAAATAAGAGGGTGCATGTGGACTTCAGCTCC GTGATCATTTATCTGTATTATGGGAATACCCTTATTTCTACTCAATATGTTGAACCTTTTTCTGCTGCAAGGAATCAGTCAAGGTTTGCAGCTATCCATA TGGTCACTAGTCAAGTTCAGTTGCCACTGAAAGAGAGCCAGTTGATGATGAAGCAAATGGAAAGCAATGGCATTTTGCTTGACGTGTTGGGAGTTTTCAG GGCAAAATCTAAATTGGGAAGGATCTTAAGGTATTCATATAACCTACATGGCTATTGCAATATCATGCTAACACGCCCTCCTGATGGAGTTTTGCTAAAA AAGAAGTGCAGAGCTAAACGCTGAAGCAGCAATTTGGCATTATTTTTTGTCATTCAAAATTGAGGGATTTTTTTGTTTTTTTACTCCTTTGAATAACATC CTTATTGATTAACATTTTTAAGCTTCTCTGCAACCTTGTACCTTTTCTTAAACCACATATTTCTATCTTAATTCTTTTTCTCCTGCAGAATCCCATGTGA TTCTTAAATTGTAATAACCATCAAATATTAGCTCAATCAATAGTATTAACAATGGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_139737; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_469673
| Blastp | NDR1/HIN1-like protein 2 from Arabidopsis with 27.36% of identity |
|---|---|
| Blastx | Pentatricopeptide repeat-containing protein At1g13040, mitochondrial from Arabidopsis with 56.67% of identity |
| Eggnog | harpin-induced protein 1 domain containing protein, expressed(ENOG410YGQV) |
| Kegg | Link to kegg annotations (AT3G11650) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463802.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |