| Id Trinity | TRINITY_DN45542_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_425822 |
| Sequence | GTTCCAACACAAACTAGTTAAAGTCAGTTCAAGTCATGTTTATGCCTTGTCCGATCTGAGTTATACATTTGTTCTAATTAGCCACCACCCACTGTGCTCT CCGCTGCTCCTTTCAATTTAAGGGATTCGTGAGGTTATGATATATGGCACTTGCATCAGACCCTCTTCACTGAGTTTCAGAGCATTACTGTTGCATAAGT CGTCGTATTTTAAAGTGAAATTATCGTCCAAGTGTTTTTCTAGGTGGATAAAAATGGAAGGTAATCTTAATTATACCATAGAGGACAACAAAAAGGAGTC TAGAGGTGCCTTGATTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGACTAGTGTCCTACCTGGAAGGGCATGGAATCTCTGCT GAACTATGGAGATTTCCCGACAGAACCACGGATGTTGGGAAAATGATATCTGCCTATCTTACTAATGCATCACAATTGGATGATCACACTATTCATCTTC TCTTCAGCGCCAATCGTTGGGAAAAGAGGTCGTTGATGGAAACTAAACTGACATCTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGTGTTGC TTTCTCAGCTGCCAAGGGACTTGATATCGAATGGTGTAAGGCACCAGAGATTGGGTTGCTTGCGGCAGATCTGGTAGCATACCTTGACATATCACCAGAG AAAGCTTCAGAAAGAGGAGGTTATGGAGGTGAGAGATATGAAAAGCTAGACTTTCAGAAGAAGGTTGCTGAAAGTTTCAAAGATCTTCATGATACAGCCT GGAAGGTAATTGGTTATGAACAGTGGCTTTCCTCTGAAATTAACATTTCTGATGCTAATGCTTTGTTGTAGCTTTCTATTAGCTCTATATAGTAGAAATG AGAATACCGTATTGGATGGGTCGAAATATTAGATAAGATAGGATTAATAATAAATGGATTATAGAGAAAGTTGAGATGTCATATATTGTAGAAGAGATAG TAGAATCTCGCTTTAGATGGTTTGAGTATACATGGAAAAGCTCCGTAGAAGTCACAATTAGGAAAGTAGATCAAATGGAGGGTAGCTTAATCACTAGAGG CAAAGGGAAACAAGAAAAACTGTAGGTGAAACTGTTGTGAAATATTTAGTAGTTAATGATTTGTCTATAGACATATTTTATGATAGAAAGTTATAATGTG TGTTATTGTTTGATACATGTAGTCGATCTCATCTAGTAGGAAAAAGCTTGGTTGTTGTTACTTGTTTTATTAGCCATGTATGCCTTCTCTGCTCTCATTG AACTATTTCAAAGCTGTTGAATTCTCCAAGACAAGGGGTTGAACCACATGTGAACATTTCCTTCGTTCTTATTTTTCTTCTTCCTATCTTTTTTGACTGG CTCGATTCAGGTTGTAGATGCTTGCCAACCCATAGAAGATGTGGAGAAGCAATTGCAAGACATAGTACTTCACTGTGTCACAGAATGTCAGAAGGGAAAA CCCCTTTCCTTCTTGTGGTCTAAATAGACTTGTACTCTTGACAGTTTCTGTAACCATGATGAGATCTTCTATATGTCTAAATTTCATAGAACTTGGCCTG CAAAAAAGCCATACTGGTGCAAGGATTTAGATTATGTTACCATTGTTATCTACCACAAAATATTACCATTTTTTACAATTACTATTTAATTTATTTATCT ACATTGAATATTATGGATGTTTAGATTAGTGTTTTTTTTTGTGTGTGATGACATTTGGGTTAGTACTTAGTTTCTATTGAGCACCAGTTACAACTTGATA ACGATATTTACGTTATTACCCTTACCACAATAGTGGCAGAGATTATGATTCTAATTTTTTTGGTTGCATGGAGATTATGTTTATAAAGAATAAAAAATAT TCAAACATATTGGTTGAGTAGGAAAATGTTGTGGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_139935; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_425822
| Blastp | Thymidylate kinase from Arabidopsis with 65.9% of identity |
|---|---|
| Blastx | Thymidylate kinase from Arabidopsis with 65.9% of identity |
| Eggnog | Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity)(COG0125) |
| Kegg | Link to kegg annotations (AT5G59440) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459500.1) |
| Pfam | Thymidylate kinase (PF02223.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |