| Id Trinity | TRINITY_DN45554_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_425782 |
| Sequence | AAAAAAGAAAGAAATTGAAAAGAGAGAGAGAGAGAAAAGTGAAAAACCCTGTTTCACTTCATCGCATTCATTCATTCATTCATCTCATTCTTCAATTGAG TACTAAATACATTAAATAATTTGGCCATGTTAACATAAAACCCTAACTTGGTGCCTCTTAATTTCACTCTCAATCACCACAAACCCTAGATTCAGAATCA GAATCACAATCCATGGCTGCCGAATTAGGTCAACAAACGGTGGAGCTATCCAAGCTGGTGAGTGCAACTGCGAATGAATCATATACTTCGCTCAAAGAAT TGGTCGATAAATGTAGGTCTTCTGATTTATCTGATACTGATAAGAAGATCAGCATGCTCAAATTCCTCACCAAGACTCAACAGCGTATGATTCGCCTCAA CGTTCTTTCCAAATGGTGTCAACAGGTTCCTTTGATACAGCACTGTCAGCAACTGGCTTCGACTGTTTCGAATCATGATATGTGTTTTACTCAAGCTTCA GATTCATTGTTTTTCATGCATGAGGGGCTTCAGCAAGCTCGTGCTCCGGTTTATGATGTTCCCTCGGCGGTTGAAATTCTCCTTACAGGAAGTTACCAGC GTATGCCAAAATGTATAGAAGATGTAGGTACTCAGCATACCTTGACTGAAGATCAGCAAAAGCCTGCTTTGAAGAAGCTGGACATGCTTGTAAGGTCAAA ATTGCTTGAAGTTTCTCTTCCGAAAGAGTTTTCTGACATTAAAGTTTCTGATGGTACGGCATTGGTTAGGGTGGATGGAGAGTTTAAGGTTTTACTGACC CTTGGTTACAGAGGAAACCTATCCTTGTGGAGGATATTACATTTGGAATTGCTTGTTGGTGAAAAAAATAAACCTGTGAAATTGGAAGCAGTACGATCTC ATGTACTTGGAGACGATCTTCAGAGACGAATGGCGGCAACAGAAAATCCATTTTCAATATTGTACTCAGTCCTTCATGAGCTATGTGTTGCACTTGTCAT GGACACTCTCCTAAGGCAAGTGCAAGTTCTTCGACAGGGGAGATGGAAAGATGCGATTAAGTTTGAGCTCATTACCGAGGGTGGCATGGGTCATGGAGCA AGCTCTAGTTCTGTTCAGAACCCTGAGGGTGAATCTGATTCACCTGCTCTGCGGACTCCAGGGTTAAAAATTATATACTGGTTAGATTTTGATAAAAATG GTAGTATGCCTGACTCAGGTGCATGCCCGTTTATAAAAATTGAACCTGGTTCAGATCTTCAGATAAGGTGTCAGCACAGTAACTTTGTCATAGATCCATT AACGGGAAAGGAGGCAGATCTTTCTTTGGACCAGAGCTGTATTGATGTTGAGAGGTTACTGTTAAGGGCTATTTGTTGCAACAGATATACTCGCCTACTG GAAATTAAAAGAGAACTGGGAAAAAATATTCAGGTCTGTCGAACAGCAGACGATGTTGTGCTCCAGTCTTGTGTGAGTGAACCAGATATTGAATACAATC AGGTTGGTTCACAATTATTGGGATTTCTTTTTCATGGAAGCTTGGAGTGTTACTCATTTTGGGTTTTGGTTTACGTGCTTCTTTGCTGTCACTCCATCAT GGGTTTTATTTGTTTGACATTTTTTTCATTTCAGAGAAATAGAGTCTCGACTATATTGCTTCATAACTGTTTGTACAGGGACCATGTGTATGAAATCTGA TTCTCTGTTAAGTATGTATATGAAAACTCCTATGCCTGATTAACCGATGTGTATGTCAATTTTGGTTTGGAATGGTCTATGTTAAGGTAAAGATGTTTTA TTAGCCAGAATTATATTAATTTTTTTCATGCATTGGCTGCCAAAGATTTGGGGTTTCTTTTATGTTGTTTGATGATGCACATGTTTTTCAGTGGAACTTT ACATTATGCAAACTATTGTAGAACTTTCATGGTTTCATGCATGATAACTTGTTGATCTTCTGTGTGTTATTCTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_139967; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_425782
| Blastp | Mediator of RNA polymerase II transcription subunit 14 from Arabidopsis with 67.37% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 14 from Arabidopsis with 67.37% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors(ENOG410XWK4) |
| Kegg | Link to kegg annotations (AT3G04740) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431890.1) |
| Pfam | Mediator complex subunit MED14 (PF08638.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |