| Id Trinity | TRINITY_DN45565_c0_g5_i2 |
|---|---|
| Name Transcript | Ll_transcript_425874 |
| Sequence | CAATCCCAAAAAATCAAACCAAACCAGGAGATTGTACTGAACCATGTTTTTTTTTATGATTTAGTTAGGTCCAATCCCATGTTGAAAATAGAACGGCTCC CCTATTTATAACCATCTGCGTCTTCCCAAATACACGCATCCTCCAATCAATCACTAGTCTACTCCCACTACCAGAGGCATGATCCATTCGGCGTACCAAA CATAAAATAGAACCAAAAATATGAGAGAAAAGTTTGGTATCTGGTTGATTATTATTTAACTTTCCCATTCTATTCCTCTCTATTTATATTCCTCCCTCTT CTTCCTTTCTATTCTCTCTTCTCAACTTCTAACTCTTTCACCCTTCTCTGCTTATTTCCTTCGTGCTTGTCCGTGACCACATTGTAAAACATAAGAAAAA TGGCCTCAGATCAGTATTTTGAGGAGGCTATGCCCCAAATGGATTACATTGAAGATAAATCATCGCCAGAACTGTGGGAATCTGCCAATGATACCAATGC AGATTCGGATAGAAATGGTGGCTTTGACTGCAACATCTGCCTGGAGAGTGTGCAAGATCCAGTTGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGC ATTTACAAATGGCTTAATTTTGATAGTTTTTCTTCCGAACATGAAGAGCAGCACAATACAGAATGTCCGGTATGCAAATCAGAAATTTCTCAATCCTCTC TTGTGCCGCTGTATGGCCGCAGCCAAACCATATTACCTTCTTCAAGGAAGACTCGCCAAGAAGGGATCATCATACCGCGAAGACCCCATGGTCCTTCATT GTTGGCTGGAACATCAAGATCATCTAATACAGCATCCTTTTCCCAACCTACTTCGCCAGTTTATCATCGTCAATATCGCAATCATCCGCAACAATTCAAC TCATTTCCTGGCAGTTACACTTCACCAATGTTTAACACAGGAGGTTCACTCACAAACACATTTAATACATCATATGGAGTCTTTGGTGAGATGCTATATT CAAGGGTCTTTGGACACCAGGTGTCAAACACATACCCCAATTCGTACAATCTTTCCCTTGACGGTAATCCAAGGATCAGAAGGCAATTGATTGAACTTGA TAAGTCACTCAATAGAGTCTGTTTTTTCCTCATTTGTTGCATAGTTTCGTGTCTTCTCTTATTCTGACTGCTATTTCACAACTTTGGTACAATACTTCCC TGTATAGAGTTTAAGCATTTCGTGGGCTCTCCTAATGTATTGAAGTCTTAACACCAGATGTATCATATATTTGCATTAGTTTGCAAATAAGCTTTGCATA TTCAGTGCTGAGATATGTGTAATTAATATGAGTTGTCTGAAATAGATGTTTGCATAAGTTTACATTTTCTTTTAATTGTGGCGTTTAGCTTGTTATAAAC TGAAACTCTTGTATCTCCAGGTACTATATATATATCAGAAGATAAAAAGAGGAAAGCTGTATAACTCATTTGTCTATATATCTTTATATTTGAGCCTTCA GGTCACACTTGCTGCTTAACTTAGGTTCTATTCTCATACCCACATGTAAATTTCACAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_140017; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_425874
| Blastp | E3 ubiquitin-protein ligase RMA1H1 from Capsicum with 45.77% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RMA1H1 from Capsicum with 44.26% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (107855034) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429640.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13920.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |