Ll_transcript_425878

• Id Trinity: TRINITY_DN45565_c0_g5_i4
• Name Transcript: Ll_transcript_425878
• Sequence: CAATCCCAAAAAATCAAACCAAACCAGGAGATTGTACTGAACCATGTTTTTTTTTATGATTTAGTTAGGTCCAATCCCATGTTGAAAATAGAACGGCTCC CCTATTTATAACCATCTGCGTCTTCCCAAATACACGCATCCTCCAATCAATCACTAGTCTACTCCCACTACCAGAGGCATGATCCATTCGGCGTACCAAA CATAAAATAGAACCAAAAATATGAGAGAAAAGTTTGGTATCTGGTTGATTATTATTTAACTTTCCCATTCTATTCCTCTCTATTTATATTCCTCCCTCTT CTTCCTTTCTATTCTCTCTTCTCAACTTCTAACTCTTTCACCCTTCTCTGCTTATTTCCTTCGTAAGTCTTTTCATCAAGTCTCTCTCTCTCTCTGTATT TTTTTGTTTGTTGAAATTTTCAAATAAGTTGTTTTTTTGTCTTTTAGTGGATGCTATACTTTCTGCGACGAAACAATGAATCATCGGCTTGTTTGAGAGA ACATAGTTTGAAGAAAAGATGTTTGTGTGACATACGAGGTTTTCTGAAATTTATGTTTACAGCTCTTAAGCTCTTAATTTTCGGCTGCTTCTACGTTGCC TTTACCGAAATAAAATTGCGACCGATTGCGGAGACGGTTGTGATATTGCGGTTGCGGAGTGCAATTTAAAATCTTTGGAAACCAACTAGTCACTTTCTTT CATTCATGTTTGTGAATCGATCACTTTGATATTTTTTTTTTCTTTTATTTATTTACTGTTTCTGACCCGTTCATACTCAAAATCATGGAATTTGAGAAGC TTTTGTTTTTACCTTGAAATGTTTCTGTTTTCCTATTTTGTTTTGCAACTTTTGTTTTACCGTCTCTGATATTAGTTTCTTAACATTCCATGTTGCTTCT TATAGAAGTCTAGAGAGTTAGCATGAACTTGACCTATTGGTCTTAGTTGGAAGAACCTCATAATTTTCTACCATGAAGGAATAGTAGTGTAATCTAATTA TTGGGTGTTATATAGTAAGGAAATTCCACTGGCTGCAGTTTCCCTTGTTAGCTTCTTCCTTGGAATTAGTTTTGTGATTTGGTTAATGGGTTCTGCCGGT CAAATAAAGATAAATTTCACTAGCTAAGTAAACCATTGAAATCCTTCAACAATCAAATCTTTACCAATATTTTTTATATTTTAAAGAGTCTAGAACTATG GTTATTTCTAAGTTCTAACTGGTCTGAAGAAATAAAACATTTTGGTTCGAGATGAATAGTCAGTAGTTTGTTGAGAATGAAGCTGGATCATCTGTGTTAA AATAACTGGTATGTTGGTTAGGTGAGCTCACCTTTATCTGCATTTCACTTACCAAAACTGCTTCTGCTTGGTGTTCTAGATTCCTTCAAATTTTGCACTG ATTCTCTAGTGTTGTATTACAGAACATGGATTTATAGATCTGGATGCAATTTCAAATTTGTTTCAATTTACAGTTTCAAGGAATTTTCTCCTTTTATTTA ATTTCTAGAGTTACTTTTAAACTTTGTAGCTTTAACTTTATCGAAGAAACCTCATTAATAGAGGATGAGTTATCTGTTAGCAGACAGTTTTACTTATATA TAATTCTTACACGCGGAGTTCTGTTTTTTGGATTCAGGTGCTTGTCCGTGACCACATTGTAAAACATAAGAAAAATGGCCTCAGATCAGTATTTTGAGGA GGCTATGCCCCAAATGGATTACATTGAAGATAAATCATCGCCAGAACTGTGGGAATCTGCCAATGATACCAATGCAGATTCGGATAGAAATGGTGGCTTT GACTGCAACATCTGCCTGGAGAGTGTGCAAGATCCAGTTGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTTGATA GTTTTTCTTCCGAACATGAAGAGCAGCACAATACAGAATGTCCGGTATGCAAATCAGAAATTTCTCAATCCTCTCTTGTGCCGCTGTATGGCCGCAGCCA AACCATATTACCTTCTTCAAGGAAGACTCGCCAAGAAGGGATCATCATACCGCGAAGACCCCATGGTCCTTCATTGTTGGCTGGAACATCAAGATCATCT AATACAGCATCCTTTTCCCAACCTACTTCGCCAGTTTATCATCGTCAATATCGCAATCATCCGCAACAATTCAACTCATTTCCTGGCAGTTACACTTCAC CAATGTTTAACACAGGAGGTTCACTCACAAACACATTTAATACATCATATGGAGTCTTTGGTGAGATGCTATATTCAAGGGTCTTTGGACACCAGGTGTC AAACACATACCCCAATTCGTACAATCTTTCCCTTGACGGTAATCCAAGGATCAGAAGGCAATTGATTGAACTTGATAAGTCACTCAATAGAGTCTGTTTT TTCCTCATTTGTTGCATAGTTTCGTGTCTTCTCTTATTCTGACTGCTATTTCACAACTTTGGTACAATACTTCCCTGTATAGAGTTTAAGCATTTCGTGG GCTCTCCTAATGTATTGAAGTCTTAACACCAGATGTATCATATATTTGCATTAGTTTGCAAATAAGCTTTGCATATTCAGTGCTGAGATATGTGTAATTA ATATGAGTTGTCTGAAATAGATGTTTGCATAAGTTTACATTTTCTTTTAATTGTGGCGTTTAGCTTGTTATAAACTGAAACTCTTGTATCTCCAGGTACT ATATATATATCAGAAGATAAAAAGAGGAAAGCTGTATAACTCATTTGTCTATATATCTTTATATTTGAGCCTTCAGGTCACACTTGCTGCTTAACTTAGG TTCTATTCTCATACCCACATGTAAATTTCACAG
• Tissue: pods
• Gene name: LI_gene_140017;
• Additional information: details;

Expression of Ll_transcript_425878

FPKM

• PAB: 1.3
• PNAB: 1
• PS1: 1.7
• PS2: 5.6
• PS3: 10.3
• PW1: 0.7
• PW2: 1.2
• PW3: 2.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_425878

• Blastp: E3 ubiquitin-protein ligase RMA1H1 from Capsicum with 45.77% of identity
• Blastx: E3 ubiquitin-protein ligase RMA1H1 from Capsicum with 44.26% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (107855034)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019429640.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;