| Id Trinity | TRINITY_DN45612_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_413258 |
| Sequence | AATAGTTACTAACAAATCAATGATAGATTATTTGCTGATGGTGTATAAAACACTTACACCGTCAATGTTTATCGCTTTACTACGAACTCTCCGAATTCCT CAAGAGAAATGGGGGGAAATTGGTAGCAGAAACAAGTGTGTTTTCAAATTCAATTTCGCCCAATATTCGTGTCTTTTCAATTTCAATTTCAATTTCGCCC AATATTTCTATAACACCTCAAACTGAAAGAAAAAAACAAGTAGCTCAGAAACTGAACTATGGCTTCTGCGGTTACGAACAATGGCAACGAAGTCAACGGT CAACGACGTGTTGGTTTACTCTACAATGAAAAAATGTGCGACCATTTCAATTTACACGATCCTCACCATCCCGAAGCCCCTGACCGAATCAGAGTCATAT GGAACAAGCTTAACAAAACTGGTATCTGCGATCGATGTGTGATATTGGATGCCAAAGAAGCTGAAGACAAATATATACAATTGGTGCATTCCAAAAGTCA TGTAAATCAGATTAAGCACATCAGCACAAAACAATACGATTCTCGAAGGCATAAGATTGCGTTAAAACTGAATTCTATATATTTTAATGAAGGTTCATCA AAAGCTGCTTATCTCGCTGCTGGCTCTGCTATTGAGGTTGTTGAAAAAGTGGCAAGCAGGCAATTGCATTCTGCTGTTGCTATTGTGAGGCCTCCAGGTC ATCATGCTGAACATAATGAAGCCATGGGATTCTGTCTATTCAACAATGTTGCAATATCTGCTTCTTATCTCTTAGATGAAAGATGCCATTTTTGTGACAG CCAGAATTAGGTATCAAGAAAATTTTAATTGTGGATTGGGACGTCCATCATGGAAATGGTACTCAAAAAACGTTCTGGAATGATTCCCGTGTCTTATTCT TCTCTGTTCACAGGCATGAGTTCGGAACTTTTTATCCATGTGGTGATGATGGCTCTTATACCATGGTTGGAGAAGGAGCCGGGGCTGGATATAATATAAA TGTACCCTGGGAGAATGGGAGATGTGGTGATGCTGATTATTTTGCAGTGTGGGACCACATTTTGCTCCCGGTTGCCAAAGAATTTAGTCCAGACATAATT ATTGTCTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGTGGATGTCGTATCACACCATTTGGTTATTCTGTTCTGTTGGAAAAGTTGATGAATT TCGCTGAAGGTAGGATAGCACTGGTTTTAGAAGGAGGATATAATCTGGACTCCATTGCAAACTCAATGCATGCTTGTGTTGAAGTTTTGCTTGAAGGCAA ACCTGTTACCGAATCTTCAGAGGCTTACCCATTTGAGTCCACATGGCGTGTGATTAAAGCGGTAACATCATACTTTACTTATATTTGAGTCCACTATTTT AGGGGTGGGGAGATTTTGTTTTCATTGCTTTTAGAGGATGGCTTACATTGGTTTCGTTCCAATTAAAGATGGGCTTTTTGTTAAATAGGTGTGCATTTTT TGCAGGTTCGTCAGGAGTTAAGTCCCTTTTGGCCTTGTCTTGCTAGTGAATTACCAAAGGATTTAATTTGTCTAGTTGCACCACCTCCGCATAATCTTAT TTCAAGCTCTGACTCTGAGACGGAGGGTGACATGGATCCCCTCAATTCTGATAACCTTGAAGAGCTTCTTCAGGATGTCATAATACCACTATCTAACCTG AAAGTTGATACAGATCAAGAGATTGGTACTTCTAATACTTGGCGATCAGAATTGTCAAATACTTACATATGGTATGCCTCTTATGGATCAAATATGTGGA AATCAAGATTCTTGTGTTATGTAGCAGGTGGACAGGTGGAAGGTATGCAAAAGCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_140116; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_413258
| Blastp | Histone deacetylase 5 from Arabidopsis with 70.29% of identity |
|---|---|
| Blastx | Histone deacetylase 5 from Arabidopsis with 54.55% of identity |
| Eggnog | Histone deacetylase(COG0123) |
| Kegg | Link to kegg annotations (AT5G61060) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019451711.1) |
| Pfam | Histone deacetylase domain (PF00850.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |