Ll_transcript_413262

• Id Trinity: TRINITY_DN45612_c0_g1_i7
• Name Transcript: Ll_transcript_413262
• Sequence: AATAGTTACTAACAAATCAATGATAGATTATTTGCTGATGGTGTATAAAACACTTACACCGTCAATGTTTATCGCTTTACTACGAACTCTCCGAATTCCT CAAGAGAAATGGGGGGAAATTGGTAGCAGAAACAAGTGTGTTTTCAAATTCAATTTCGCCCAATATTCGTGTCTTTTCAATTTCAATTTCAATTTCGCCC AATATTTCTATAACACCTCAAACTGAAAGAAAAAAACAAGTAGCTCAGAAACTGAACTATGGCTTCTGCGGTTACGAACAATGGCAACGAAGTCAACGGT CAACGACGTGTTGGTTTACTCTACAATGAAAAAATGTGCGACCATTTCAATTTACACGATCCTCACCATCCCGAAGCCCCTGACCGAATCAGAGTCATAT GGAACAAGCTTAACAAAACTGGTATCTGCGATCGATGTGTGATATTGGATGCCAAAGAAGCTGAAGACAAATATATACAATTGGTGCATTCCAAAAGTCA TGTAAATCAGATTAAGCACATCAGCACAAAACAATACGATTCTCGAAGGCATAAGATTGCGTTAAAACTGAATTCTATATATTTTAATGAAGGTTCATCA AAAGCTGCTTATCTCGCTGCTGGCTCTGCTATTGAGGTTGTTGAAAAAGTGGCAAGCAGGCAATTGCATTCTGCTGTTGCTATTGTGAGGCCTCCAGGTC ATCATGCTGAACATAATGAAGCCATGGGATTCTGTCTATTCAACAATGTTGCAATATCTGCTTCTTATCTCTTAGATGAAAGACCAGAATTAGGTATCAA GAAAATTTTAATTGTGGATTGGGACGTCCATCATGGAAATGGTACTCAAAAAACGTTCTGGAATGATTCCCGTGTCTTATTCTTCTCTGTTCACAGGCAT GAGTTCGGAACTTTTTATCCATGTGGTGATGATGGCTCTTATACCATGGTTGGAGAAGGAGCCGGGGCTGGATATAATATAAATGTACCCTGGGAGAATG GGAGATGTGGTGATGCTGATTATTTTGCAGTGTGGGACCACATTTTGCTCCCGGTTGCCAAAGAATTTAGTCCAGACATAATTATTGTCTCTGCTGGATT TGATGCAGCTGTTGGTGACCCTCTGGGTGGATGTCGTATCACACCATTTGGTTATTCTGTTCTGTTGGAAAAGTTGATGAATTTCGCTGAAGGTAGGATA GCACTGGTTTTAGAAGGAGGATATAATCTGGACTCCATTGCAAACTCAATGCATGCTTGTGTTGAAGTTTTGCTTGAAGGCAAACCTGTTACCGAATCTT CAGAGGCTTACCCATTTGAGTCCACATGGCGTGTGATTAAAGCGGTTCGTCAGGAGTTAAGTCCCTTTTGGCCTTGTCTTGCTAGTGAATTACCAAAGGA TTTAATTTGTCTAGTTGCACCACCTCCGCATAATCTTATTTCAAGCTCTGACTCTGAGACGGAGGGTGACATGGATCCCCTCAATTCTGATAACCTTGAA GAGCTTCTTCAGGATGTCATAATACCACTATCTAACCTGAAAGTTGATACAGATCAAGAGATTGGTACTTCTAATACTTGGCGATCAGAATTGTCAAATA CTTACATATGGTATGCCTCTTATGGATCAAATATGTGGAAATCAAGATTCTTGTGTTATGTAGCAGGTGGACAGGTGGAAGGTATGCAAAAGCACTCTTC TGGTGCAGTGGACAAAGCTCCACCAAAGGAAATCCTTTGGAAGACTTTCCCTTGCCGTATATTTTTTGGCCGCAATTCTTCCAAGTCATGGGGTCCTGGA GGGGTTGCATTTTTTAATCCTGAGAGAACTTTTCAGCACAATACCTACCTATGCCTGTACAAAATTTCGCTAGAGCAGTTCAATGATGTTTTACTTCAGG AAAACGGTTTAAGCCTTAATGTGGGTTCTCCTTTATTTGATATAACTGCCCTTAATGCTATCTCAGAGAAGGAGTTCAATTCTTCAGAGGCTGTGAAGGG TTCTTGGTATGGTGATGTTGTCTACTTAGGAAAGGAGCATGATATCCCAATTCTTACCATGACGTGTTCATTTCTCGATATCCAACGCTTTAAAACGGGG GAGCTGCCACTGAATGCTCCTAATAAAGCTTATGCCAACACCTTAATCAAAGGGTTGGTAGAGGGAGAACAGTTTTCAGAGGTGGAAGCCATTGCTTACA TAGAAGAAGCTGCTGCTAAACCCTTATAATTTGGACATAGGTGTGTTATTTCCTCTGGCAGTGCACGTTCTGTAACAGCTTTGTATTACAGAAGAGTAGG ATATATTTGTAGTTGACGAAAACCCTTATGGTATGGCTTCAAGGATCATAACAGCGTTGGATTGCATATATAGTTTTGAAGGGCATTGATATTTGCCCCT AATAGTTAGGGTGATTGGTAGTGTTGAAATCTTGATAACTACGCTCTCTTCCGCTTACTGTAATATTCAAAATGATTGAATTGCATTTATGGCCTTCTGT AGTTTTTCTAAAAAATGCTCATTAAATTAT
• Tissue: pods
• Gene name: LI_gene_140116;
• Additional information: details;

Expression of Ll_transcript_413262

FPKM

• PAB: 9.3
• PNAB: 18.4
• PS1: 14.8
• PS2: 6.3
• PS3: 10.1
• PW1: 12.9
• PW2: 9.2
• PW3: 5.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_413262

• Blastp: Histone deacetylase 5 from Arabidopsis with 61.65% of identity
• Blastx: Histone deacetylase 5 from Arabidopsis with 61.65% of identity
• Eggnog: Histone deacetylase(COG0123)
• Kegg: Link to kegg annotations (AT5G61060)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019451711.1)
• Pfam: Histone deacetylase domain (PF00850.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;