Id Trinity | TRINITY_DN45654_c4_g1_i1 |
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Name Transcript | Ll_transcript_413368 |
Sequence | GATTTTCTTAAGATTTATAGTTTGAGGGTTTAATATCAGTCGCAGCAGCACTCTTCTATTTCCTTCAACCATTCATTGAAACAAAAACAGCTTTTGAAGT TGCAGAAGCACTTTTCAAAAACAGCTTAACTGTGCTGCTTCTATTTTGAAAAATGCCTTCAGCAGCGTCTCATGGAAATCACCACCATCCTAGCTCTTCT TCCAAATCCTCCAACGATAACCGCAATCGTCAAAATCAATTCTCGGACCGGAGACACAAGATTTTACAACAGAGGAAGTCTCTTCCCATTGCTTCGGTTG AGAAAAGACTGGTTGATGAGATCCGGAAGAACGATATTTTGATTATTGTTGGTGAAACTGGAAGTGGAAAAACCACACAGATTCCGCAGTTTCTTCTTGG TGCTAAATTTTGCCATGATGGAAAAGTTATTGGGATAACTCAACCCAGACGTGTAGCTGCTGTTACTGTGGCCAAACGGGTTGCTGAGGAATGTGGTGTG GAGTTGGGCCAAGAGGTTGGGTATTCCGTTAGATTTGATGATACTAGTTCCAGCTCCACAAGGATCAAATATATGACAGATGGATTGCTTCTGAGGGAAG CATTGTTGGATCCATATCTTTCCAAGTATTCTGTGATAATTGTTGACGAAGCACATGAGAGAACTGTCCAGACTGATGTCTTGATGGGCTTGCTAAAAAG TGTACAACTTGCTCGGTCAAATTCTGCCAGTCATGGTCAGGGCCTTAATTTTGGAAACAAGAGTGTGAATAGTGTCACGTCATCGGAGAAAGAAAATAGT GGTCAGAGTAATAGTTTCCTTAAAAAGGAGCACCAGTATGCTCCATTGAAGTTAATCATCATGTCTGCAAGTCTTGATGCACGCACTTTCTCTGAGTATT TTTGTGGCGCCAAAGCTGTTCACGTCCAAGGGAGACAGTTTCCCGTGGATATATTTTATACTCGTCATGCAGAGCCAGATTATTTAGATGCTGCCTTGAT AACAATATTCCAGATTCATTTAGAGGAGGGCCCTGGTGATATACTAGTATTTCTGACTGGGCAAGAAGAGATTGAATCTATTGAAAGACTTATTAATGAG CGGCTCACAAAATCACCTCAAGAAAGTCAAAAGCTTCTAGTTGTGCCTATCTTTGCAGCACTTCCATCTGAGCAGCAACTTCGGGTCTTTGCGCCTGCTC CATCTGGTTTTCGCAAGGTATCTCAGCTATCATTAGATATTTATTTAATTAGTATATTAATTTTGAAAATAAGTTCAAGTTAATCATTTTCAAAACTGTT TTCATTTATTTTAAACAGTTGACATGTTTTGTCTAAATGGTGAGACTCAGCGCAACAGAAAGGTTGCTTGCCTTGTGACATGAAGGTCATGTTTTTGAAT CCTGGAAACGACATCTTCACTTACGAGGGTAAGACTGTATATATCTACCCTCTCTAGACCCCACTAGGTGGGAGTCTCATGCAGTGGGCTGTCCAATTTA GTTGACATGTTTTGTCTAGTTTTCCATTCATTTTCTTCAAGCTTTCTCTTTTGTCTGACCATGTCTACAATGTGAAGTAAATGACTGGATGTTCACTTGG GCAGATATGACTTGTATAATGGTCATCTTCCGTTTTCTTTCATGATTTGATAACATTGTCTTACCCTTAATCACTATCAGCGACGTAGTCTGACTGTGAT ATACCATTTTTCGGTGGCTTTCACGCTTACTGAAATACTTATGCAATTCTGCCAGCATTTCTGCATACCATCCAGTGATCTACCATTACTAAACCGAACT TTATATAGTCTATTGTTAATTTTTCATAAAGGCTCACTGCAACAGCTAACATGTTTGCCATCTCCTATAGTACCTTTAATGTTTTATTTTACCAAACCAA CACAACTTTTGCTTTAGGAATTATGTCATCTCAACTGGTCATAATTTCCATAAACAGTAAATGGGTATTCAAAATGGTGCATGTCAGTACTGTATATCAC CCATTTAATGTCAGCTTAGGGTAATTAAAATAATTTGAGATTTTTATCATATCAGGAATCACTTGTTTTTTAATGTATTCAACCAATTTCTCTGTTCTTT TCTAAGGTGATATTGGCAACTAATATTGCTGAGACATCGGTAACGATTCCTGGAATCAAGTACGTAATAGATCCTGGATTGGTCAAAGCGCGCTCCTATG ACCCTGCCAAGGGCATGGAATCTTTGAATGTAGTACCTACATCCAAGTCTCAGGCTCTGCAAAGAAGTGGGCGTGCAGGGCGTGAAGGACCTGGAAAATG CTTCCGTCTATATCCAGAAAATGAATTTGGTAAACTCGAGGATTCAACCAAGCCAGAGATTAAGCGGTGCAATCTTTCTAATGTCATTTTACAGCTCAAG GCTTTGGGTGTTGATGACATATTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATTATCAAATCATTGGAGCAGCTGTTTTTGTTAGGTGCTC TAACAGATGAGTGTCGGCTATCTGATCCAGTTGGATATCAAATGGCCCGGCTACCCTTGGACCCTGTTTATTCCAAAGCTCTTATTTTAGCTAGTCAATT TAACTGCTTGGAAGAGATGTTGATAACCGTTGCAATGCTGTCTGCGGAGTCCATATTTTATGCTCCCCGTGACAAGTTAGACGAGTCAAGAACTGCAATG AAAAGCTTCTCAAGCCCAGAGGGAGATCATATCACTGTGATTAAAGTGTATCGGGCATATAGTGAATTCTTGGAGAAGAAATCAATTGAAATTGGCAAAG CAAAAAGTGAGAAGGCTTTGAGGAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCTTAGACATGCTTGTGACATTCACAGGCAGATTTTGGGACA TGTTCAACAAATGGGTCTGAGTCTCGCTTCTTGTGGAGATGATATGCTTGAGTACCGCAGATGCCTTGCTGCGTCCTTTTTCCTCAATGCAGCTGTAAAA CAGCCAGAGGGAACATACAGGGCTTTGGCAAGTGGTCAGGTGGTGCAGATACACCCATCTTCTGTATTATTCCGGCAAAAACCAGAGTGTGTGATATTTA ACGAATTGTTACAAACTAATAACAAGTATGTCCGAAATTTAACCAGAATCGACTACCTATGGTTAACTGAGCTGGCTCCTCAATATTATGCCGTGCATAA TTGAAGTATTAATGATGCCACTGAAATGAACAATGCAAGCTTCAGAATATATCTAGCCAGTGGTTTTATGGATGTTGCTTCATGACTTTTAATCATGCCA GATTTTATAAAGGGCTTATCATTGGTAACCATTTGATGTGTGAGATGTGTAGATACCATCTAATCGTGCAATGGTGAGCCCCTTTTTCTGGGTCGTCATC ACCTTTTTTTTCTCTCATTTGGAAAGTTACGGCTACTAGATTTAGGAATGATTAAGTGGTGGAAGGGTGCACCCTACACGATTACGAACCTCATCCGGGT GGTGGTTCAGCATGAACAATGGAATTATTCACTTCACAAACTATGAAATTGTCTTAAGTTATTAACTTCAATCTCACTTAGGAAAAATATTGTTTGATGA ACAGTCAAATTTTGAGTGCTAATGTATGTCAATAGGTTTAAGAATGAGTTGTATGATTTGTCTAAGTAGTTCATGTATTGAAATATACATCTATAATCTA TTTACTCTGCATAGCAATTTCAGTGGATACTTCCCTCATATAGCAATATCTTCCAAAACATTACAAGTTAATAGCTTTGCTTTGTCAAGTTACCATCCAT GAATACTCACTCTGTAGGATAAGGCTATCAATCT BLAST |
Tissue | pods |
Gene name | LI_gene_140234; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_413368
Blastp | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 from Arabidopsis with 69.03% of identity |
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Blastx | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 from Arabidopsis with 70.08% of identity |
Eggnog | helicase(COG1643) |
Kegg | Link to kegg annotations (AT1G26370) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019434270.1) |
Pfam | AAA domain (PF13401.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |