Ll_transcript_413369

• Id Trinity: TRINITY_DN45654_c4_g1_i2
• Name Transcript: Ll_transcript_413369
• Sequence: GATTTTCTTAAGATTTATAGTTTGAGGGTTTAATATCAGTCGCAGCAGCACTCTTCTATTTCCTTCAACCATTCATTGAAACAAAAACAGCTTTTGAAGT TGCAGAAGCACTTTTCAAAAACAGCTTAACTGTGCTGCTTCTATTTTGAAAAATGCCTTCAGCAGCGTCTCATGGAAATCACCACCATCCTAGCTCTTCT TCCAAATCCTCCAACGATAACCGCAATCGTCAAAATCAATTCTCGGACCGGAGACACAAGATTTTACAACAGAGGAAGTCTCTTCCCATTGCTTCGGTTG AGAAAAGACTGGTTGATGAGATCCGGAAGAACGATATTTTGATTATTGTTGGTGAAACTGGAAGTGGAAAAACCACACAGATTCCGCAGTTTCTTCTTGG TGCTAAATTTTGCCATGATGGAAAAGTTATTGGGATAACTCAACCCAGACGTGTAGCTGCTGTTACTGTGGCCAAACGGGTTGCTGAGGAATGTGGTGTG GAGTTGGGCCAAGAGGTTGGGTATTCCGTTAGATTTGATGATACTAGTTCCAGCTCCACAAGGATCAAATATATGACAGATGGATTGCTTCTGAGGGAAG CATTGTTGGATCCATATCTTTCCAAGTATTCTGTGATAATTGTTGACGAAGCACATGAGAGAACTGTCCAGACTGATGTCTTGATGGGCTTGCTAAAAAG TGTACAACTTGCTCGGTCAAATTCTGCCAGTCATGGTCAGGGCCTTAATTTTGGAAACAAGAGTGTGAATAGTGTCACGTCATCGGAGAAAGAAAATAGT GGTCAGAGTAATAGTTTCCTTAAAAAGGAGCACCAGTATGCTCCATTGAAGTTAATCATCATGTCTGCAAGTCTTGATGCACGCACTTTCTCTGAGTATT TTTGTGGCGCCAAAGCTGTTCACGTCCAAGGGAGACAGTTTCCCGTGGATATATTTTATACTCGTCATGCAGAGCCAGATTATTTAGATGCTGCCTTGAT AACAATATTCCAGATTCATTTAGAGGAGGGCCCTGGTGATATACTAGTATTTCTGACTGGGCAAGAAGAGATTGAATCTATTGAAAGACTTATTAATGAG CGGCTCACAAAATCACCTCAAGAAAGTCAAAAGCTTCTAGTTGTGCCTATCTTTGCAGCACTTCCATCTGAGCAGCAACTTCGGGTCTTTGCGCCTGCTC CATCTGGTTTTCGCAAGGTGATATTGGCAACTAATATTGCTGAGACATCGGTAACGATTCCTGGAATCAAGTACGTAATAGATCCTGGATTGGTCAAAGC GCGCTCCTATGACCCTGCCAAGGGCATGGAATCTTTGAATGTAGTACCTACATCCAAGTCTCAGGCTCTGCAAAGAAGTGGGCGTGCAGGGCGTGAAGGA CCTGGAAAATGCTTCCGTCTATATCCAGAAAATGAATTTGGTAAACTCGAGGATTCAACCAAGCCAGAGATTAAGCGGTGCAATCTTTCTAATGTCATTT TACAGCTCAAGGCTTTGGGTGTTGATGACATATTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATTATCAAATCATTGGAGCAGCTGTTTTT GTTAGGTGCTCTAACAGATGAGTGTCGGCTATCTGATCCAGTTGGATATCAAATGGCCCGGCTACCCTTGGACCCTGTTTATTCCAAAGCTCTTATTTTA GCTAGTCAATTTAACTGCTTGGAAGAGATGTTGATAACCGTTGCAATGCTGTCTGCGGAGTCCATATTTTATGCTCCCCGTGACAAGTTAGACGAGTCAA GAACTGCAATGAAAAGCTTCTCAAGCCCAGAGGGAGATCATATCACTGTGATTAAAGTGTATCGGGCATATAGTGAATTCTTGGAGAAGAAATCAATTGA AATTGGCAAAGCAAAAAGTGAGAAGGCTTTGAGGAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCTTAGACATGCTTGTGACATTCACAGGCAG ATTTTGGGACATGTTCAACAAATGGGTCTGAGTCTCGCTTCTTGTGGAGATGATATGCTTGAGTACCGCAGATGCCTTGCTGCGTCCTTTTTCCTCAATG CAGCTGTAAAACAGCCAGAGGGAACATACAGGGCTTTGGCAAGTGGTCAGGTGGTGCAGATACACCCATCTTCTGTATTATTCCGGCAAAAACCAGAGTG TGTGATATTTAACGAATTGTTACAAACTAATAACAAGTATGTCCGAAATTTAACCAGAATCGACTACCTATGGTTAACTGAGCTGGCTCCTCAATATTAT GCCGTGCATAATTGAAGTATTAATGATGCCACTGAAATGAACAATGCAAGCTTCAGAATATATCTAGCCAGTGGTTTTATGGATGTTGCTTCATGACTTT TAATCATGCCAGATTTTATAAAGGGCTTATCATTGGTAACCATTTGATGTGTGAGATGTGTAGATACCATCTAATCGTGCAATGGTGAGCCCCTTTTTCT GGGTCGTCATCACCTTTTTTTTCTCTCATTTGGAAAGTTACGGCTACTAGATTTAGGAATGATTAAGTGGTGGAAGGGTGCACCCTACACGATTACGAAC CTCATCCGGGTGGTGGTTCAGCATGAACAATGGAATTATTCACTTCACAAACTATGAAATTGTCTTAAGTTATTAACTTCAATCTCACTTAGGAAAAATA TTGTTTGATGAACAGTCAAATTTTGAGTGCTAATGTATGTCAATAGGTTTAAGAATGAGTTGTATGATTTGTCTAAGTAGTTCATGTATTGAAATATACA TCTATAATCTATTTACTCTGCATAGCAATTTCAGTGGATACTTCCCTCATATAGCAATATCTTCCAAAACATTACAAGTTAATAGCTTTGCTTTGTCAAG TTACCATCCATGAATACTCACTCTGTAGGATAAGGCTATCAATCT
• Tissue: pods
• Gene name: LI_gene_140234;
• Additional information: details;

Expression of Ll_transcript_413369

FPKM

• PAB: 0.5
• PNAB: 4.2
• PS1: 5.4
• PS2: 3.2
• PS3: 4.7
• PW1: 3.8
• PW2: 3.3
• PW3: 4.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_413369

• Blastp: Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 from Arabidopsis with 71.24% of identity
• Blastx: Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 from Arabidopsis with 71.2% of identity
• Eggnog: helicase(COG1643)
• Kegg: Link to kegg annotations (AT1G26370)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434270.1)
• Pfam: Helicase conserved C-terminal domain (PF00271.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;