Id Trinity | TRINITY_DN45857_c1_g1_i2 |
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Name Transcript | Ll_transcript_356561 |
Sequence | GGAATAGGCAGAGAAATGATGTACGTTTCAGTTCAGTGTTTTCTTTCTTTCTCTTAGTCTTTTTTACCTAACCTTCCATCGTGTTGAATTGGGTGTTTCA ATTCTCTGTTCAGATTCCTCATTCTTTATATTTGATTCATCATGTTTCCAAGATTCGCTTCTATTCGTTGTTTTCCTCTTCAACAATTCGGTACTGTTCC TCATTCTCACTCTTCCCCCTTTTCCTTTTTAACCTATTGCACCATAGCCACTGATACCGATATTGATACTGATATTGATATTGATGAGAGATTAAAGAGA CCACACCGAGTTAATTCTATTAGAAATCTCAAGAATCTTGATGCTGCTTTGAATTTCTTTCAAAAAATGGTTACCATGAACCCTTTACCAACTGTTAAGG ATTTTAACTTATTGGTTAGTTTTGTTGTCAAGATGAAGCATTATGAAACTTCAATTTCTTTAATCAAACACTTTTGTTCCTTAGATGTTAAACCTAACGT CGTTACTCTCAATATTGTCATCAATTGTCTGTGTCGTTTGCGCCATACTCCTTTTGCGTTCTCTGTTTTGGGGATTATGTTCAAAATCGGGTTGGAGCCG ACCGTGGTTACTCTTACCACCATTGTTAATGGGCTTTGCATCGAAGGCAATGTGGCTGAAGCAGTTAACTTAGTTGAGCATGTGGAAAAAATGGGATATC AACCGGATAGTCACATGTATGGGGCGATAATTAATGGGTTATGCAAGACGGGAGACACATCGTCTGCTATAAGGTTTCTAAGGAAGATGGAAGAAAGAAA TTGCAAAGCACAAGTTATAGTTTATAGCACGATTATTGATTCTCTTTGTAAGGATAGGCTGGTTTCTGAGGCTTTAAATTTGTGGTCAGAAATGGTTGGG AAAGGTATTCAACCTAATGTTGTCACTTACACTTGCTTAATTCATGGCCTTTGTACTTCTAGTAGATGGAAAGAGGCAGCGACGCTACTGAATGAGATGA CGCAAAAGGAAATCTACCCTAATGTGCAAACTTTTAATATCTTAGTAGATGCTCTTTGCAAGGAGGGGTTGCTTATGGGGGCTAAAAGTATAATTGCTTA CATGGTTCAGATGGGGGAGGAGCCTAATGTTGTCACCTATAACTCACTGATTAGTGGTTATTGTTTGCAAAACCAAATGAAGGAGGCCATGAGAGTATTT GATTTGATTGCCGACAAGGGATGTTTGCCAGACATTGTAACTTATAGTTCATTAATCAATGGGTGGTGTAAAGTTAAAGACGTTGATAAGGCTATCTCAC TCTTGGGTGACATGGTCAATAAAGGATTGCATCCAGATGTTGTCATTTGGAACACTCTTATTGGTGGGTTTTGCAACGCAGGGAAACCACTAGCTGCAAA AGAATTGTTTTTCACGATGCACAAGCATGGCCAACTTCCCAATCTCCAGACCTGTGGCATTATATTAGACGGCCTATTCAAATGCAGCTTCCATTCTGAG GCAATATCATTGTTTAGAGAAATGGAGAAGATGAATTTGGATCTCAATATTGTGATTTACAGTATTATGCTACGTGAAATGTGCAGTTCTGGACAATTGA AGGATGCACAAAAACTCTTTTCGTGCTTACCAGCTAAAGGGTTGAAAGTTAGTGTTTATACTTATACCATAATGATTCAAGCCCTATGCAAAGAAGGACT ATTGGACGAGGCTGAAGACTTACTAATGAAAATGGAAGAGGATGGATGCCTTGCCGACATGTGCACTTATAATGTCTTGGTCCAAGGATTGCTGAGAACA AAAGATTTTTCAAGGTCTAGAAAATACCTTCAAATAATGAAAGCCAAAGGTTTGTTAGCAGATGCTACCACCACAGAATTGCTTATCCACTATTTCTCTG GTAATGAAGGACATAATGATCTTCAAGAGTTTCTGCAGAAAACTGTTTAAATTAATATTTTTAAATAATTATTTAACTTGGGTTAGTTGAGATAGGCTAT GATTACTCATATTTTTTCTACCATTCGTAAAGAAACGGCCTAGTGCACGAGACTTTTACCTGGTGAGGTCTGAGGAGGTAGATGTACACAGCCTCAACTT GGTTTTAATATTCAAGTAACAATGTCTGTATGTTAGGATTAATAATACTAGGGTAGTATATTTTTCAGCCAAAGATCAATCTCTTCTGCAATAAGAAGTC TATCCTCTCTGACAATGTAATAGCAGATTGCTTATTTGATCTCCAGATTATATTCATTTATGCTTTTTGGCAAGGTTCTATCACCAATTCTCATGTGTCA AGGGCAGTTTTTGATGTCCCATATTGAATTTCCCTCATACGCCACAAGATTTGATATTATTGCATATCTATATTACTTTAATTATAACTTCCATAATTTA TTTCCTTTGTCTTTATATTTTCTCTCCTTGTTGACAAGGAATTTGGGAGGTTTGTTGTGCCTTTTCAAGGGGTTCGGTACCAGCATTACAAGTACAGAGG TGCTTTTCAACTACCCAGCAATATAAATGCACTGTTCCACTTCAACCGTAGGCAGTGTTCTATGAGGAATTCTATTTTGAATTCATGTTGTGTTGAGAAC TAGGTTCCCACCCGGAACATGCTTCTCACTATTCCTTTCAGATTCAGAGGGACAAAGTCCTAGCTGCATTTGTTTTGCATAATTCAGTTCTCCTTGGGGA AATAAATGACCGGTTATTCAGTGGTGTTTGGGGAAGGGGCACTGGTTTATTAACTGTCAGATCTTGATAAACTTCATGATGTTCAGTTGCTTTCTTCAGT AGAAGAAGAACTTGGTTCTCATTACAGGATTCAATTGATGCAGCTATGTGGGACGAATGATGATTCTTGGATGGAAAAATGGGGTAGTTTGGTTGCTCAA TATGTGATATTGTTGGAAAAGCTCATATGACTTGATGTCCCCATTAACATGTGTATTAGATGTTTAGGTCAATCAAGGCTCAACATTTGTGAGTAACATG AATTTTACTCTCTGCATATCTTGTCAACTAATATTGACATGTTGAAATGGAATTTTGAAGGTTGCTTGCTTTGGATGTATATGTCATGACAGCTTGTAAT TGCATTTCTAGCTTGCTGTGGTGCCTAGTTCTTTGCAAAGTATCAATTATTTGCCTCAGGAAGCACTGTGGGCATGACATAGTGGCA BLAST |
Tissue | pods |
Gene name | LI_gene_141020; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_356561
Blastp | Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial from Arabidopsis with 42.7% of identity |
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Blastx | Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial from Arabidopsis with 42.7% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT1G12700) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449449.1) |
Pfam | Pentatricopeptide repeat domain (PF13812.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |