| Id Trinity | TRINITY_DN45881_c0_g3_i13 |
|---|---|
| Name Transcript | Ll_transcript_356273 |
| Sequence | GTTAATTGCTTTTTCCTATCCTCTGCCTATCTACTGTTCGATAAAATGCCTCTTCTTACCATTCATTTCACTTTAATATTTTTTGGATAGGTACATTTCA CAGTGCCCACAAAACCAACTTATGTTGTTTCGATGAAAGGGATGATGAAATTTGCAGGATATTCCTTCCCATTTTCAATTCCTCCCATCACTTCTATTCT CACTCTAAACACTTGCAGATTCTCTAATAGTAATTTGTGTAGGCCAATCTTCTTTTCTGCTTACACTCAGAAACAATCATATCGTAAATCTCAATCTGGG GTTCTTGCAAAATGCTATCTTCCTCCTTCATTTAGTGTTGCTCCAATGATGGACTGGACAGACAATCACTATAGGACTCTAGCACGCATCATATCAAAAC ATGCCTGGCTTTACACTGAGATGGTTGCTGCTGAAACAATTGTTCATCAAAAGGAAAATCTGGATAGGTTCTTGGCATTTTCTCCAGACCAACATCCCAT TGTGCTTCAAATTGGAGGGAGTAATATCGAAAGTTTGGCAAAAGCAACTGAACTTTCTAATGCTTATTGCTACGATGAGATCAACTTAAACTGTGGATGT CCTAGTCCAAAAGTAGCTGGACACGGGGGCTTTGGTGCGAGTCTTATGCTTGACCCAAAGGTTAGAAAATCACTTTTAGTTAAACATGACCTGAAAACAG ATTGAATATATAAATATTCTTCATCAGTGTGCATTATATAGAAATCTAATGTATAAAAGGAAAGTTTGTTGCTGAAGCTATGTCAGCAATTGCTGCCAAC ACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTATGATGAGCTGTGTAAGGTCCTTCTTTAAACATTCTTTGTCTGAT AAAATTGAAAGGCTGTAAAGTTTGGATTCTATGAATAGGTTTTGTCCTCCTCTTTTTAAAATTAATGGGAAATGATGTTACATTACACACACATATTTTT CTATATCCTTTTATCTGCCATGTCTCAAGTTTTTGCTACTAAGCGGTGCTCGAATAGTGTTTTGCATGTATAATGCACTAAAAATGGGGTATCCACTATT CAGCTGATTGGGTAGGTATCTGGTGGATGCTTATCATCTCAAATCTTATAGTTGTTGACTTGTTACCATTAACTCAACTTCTACTAAATTGATCAAAGCC ACATAGTGGCTTGCTGATAGGAGCCAGGAGTTTGAAGTGTGATAATTATGATTGCTATACTAACAATGGAGAAGTTTGAATTTGGTTGCTAACCATTACT AAAATGAAATAACATATAGATTGTAGTCGTAGAGATGTTTGTATCTAACATAATATACTTTAATGCAGTTGTCGGGGCCACTTTTGTAGTCTAACAGAAT ATACTTTATTTTGCATCTTAGGCTTGCAGGTGTCTCCATCTATTTGTCTTTTAGACTCCATCGTGCATTGCCATTTATGTGATTTGAATCTTATGTTATA ATCTCTTCCATAAAAAAATTATTCTATGATTTTTGGCATTACATACTGCACATTCTGTTGTCTGGCAGGTGATTTCATCTGCATGGTTTCTTCTATATCT CCCACTAAGCATTTCATAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCGGCTGAAAACCGGAGTATTCCTCCACTGAAATATGAATACTTTT ATGGTCTCTTACGTGACTTTCCTAACTTAACATTTACAATCAATGGTGGCATTACTAGTGTTGATGAGGTGAGTTGCTGTCATGGTAATTGTTCTGTGTA TTGAGACCTGATATACATATGAAATTTCCAGGACTGAAACTTTTCTCTTTAATTGCTGTATTGTTATGATGCTTCTGTTTTTCCTTGTTTTTTTTGGGAT TCTGATTTCAGGTCAATGCTGCTCTTGAAGCTGGGGCTCATGGTGTTATGATTGGACGTGCAGCATACAATAACCCTTGGCATATTTTGGGACACGTTGA TACTGCTATTTACGGTGAACCTAGCACTGGTCTTACACGTCGTCAGGTACTTGAAAAATATCAATACTACGGGGACTCAGTGTTGAGAAAATATGGACAT AGGCCGACTGTGCGAGATATCGTAAAGCCTTTACTCCATCTTTTCCATTCAGCGCCAGGCAATGGACTTTGGAAGCGCAAAGCAGATGCTGCCTTTCGAA ATTGCATGACAATCAAATCATTTTTTGAAGAAACTCTTGTTGCAATTCCTGATTCGGTATTAGATTCGCCTGTGGCTGAACCACCTCCGGGCCGTGAAAA TCTTTTTGCTAACATAGACAGTTTGCTGCCTGCTCCATACAGAACAAGAGAAGAGATTGTTATTTGCGCTTAGGTTCACTTGTACACTACAAATCATTGG TGTTGTTGTCATTATCATTTCATTAAGTTTAATACAATGTAATTGCACCAGACTTTGAAATGTAAGCAATTGACTTTAAAGTGTAATCCATTGGAAATTT GTAAATTGCAATTCCTTGTAGCGTTTGCTTTTGCTGTGGAAATTTGTACTGAGTTCTAAACTGTTAAAAGTAGAATGCTGTGTGGCACATTTATTGTTTT AAAAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_141140; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_356273
| Blastp | tRNA-dihydrouridine(20/20a) synthase from Thermus with 50.83% of identity |
|---|---|
| Blastx | tRNA-dihydrouridine(20/20a) synthase from Vibrio with 51.35% of identity |
| Eggnog | Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity)(COG0042) |
| Kegg | Link to kegg annotations (TTHA0016) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019412853.1) |
| Pfam | Dihydrouridine synthase (Dus) (PF01207.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |