Ll_transcript_356278

Id TrinityTRINITY_DN45881_c0_g3_i16
Name TranscriptLl_transcript_356278
SequenceGTTAATTGCTTTTTCCTATCCTCTGCCTATCTACTGTTCGATAAAATGCCTCTTCTTACCATTCATTTCACTTTAATATTTTTTGGATAGGTACATTTCA CAGTGCCCACAAAACCAACTTATGTTGTTTCGATGAAAGGGATGATGAAATTTGCAGGATATTCCTTCCCATTTTCAATTCCTCCCATCACTTCTATTCT CACTCTAAACACTTGCAGATTCTCTAATAGTAATTTGTGTAGGCCAATCTTCTTTTCTGCTTACACTCAGAAACAATCATATCGTAAATCTCAATCTGGG GTTCTTGCAAAATGCTATCTTCCTCCTTCATTTAGTGTTGCTCCAATGATGGACTGGACAGACAATCACTATAGGACTCTAGCACGCATCATATCAAAAC ATGCCTGGCTTTACACTGAGATGGTTGCTGCTGAAACAATTGTTCATCAAAAGGAAAATCTGGTAACTTTAGATATTTAAATATGGTTATTTAACAGAAA ATAAGTAATGGGACTATGGACTATGTGAACAATTAAGACCACAATTGCAATTTTTGTAGCAGTATGAAATTTCCGTGATGAAAAATAACAAGCAATGGTT TATTTTTTGTGTATAAGTATATTGCTTAAGTCATAGCTGTGGGTGCATGTGTGCGCACAAGAGCGCTACTGAACGGAATGAGATTTGACACCATCATTTG TTGATAATTTGATGCTGGAAGGAAAACCATTGATTCTATTATTTTCTCTATTCTGCTCAGGATAGGTTCTTGGCATTTTCTCCAGACCAACATCCCATTG TGCTTCAAATTGGAGGGAGTAATATCGAAAGTTTGGCAAAAGCAACTGAACTTTCTAATGCTTATTGCTACGATGAGATCAACTTAAACTGTGGATGTCC TAGTCCAAAAGTAGCTGGACACGGGGGCTTTGGTGCGAGTCTTATGCTTGACCCAAAGGTTAGAAAATCACTTTTAGTTAAACATGACCTGAAAACAGAT TGAATATATAAATATTCTTCATCAGTGTGCATTATATAGAAATCTAATGTATAAAAGGAAAGTTTGTTGCTGAAGCTATGTCAGCAATTGCTGCCAACAC AAATGTACCTGTCAGTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTATGATGAGCTGTGTAAGGTCCTTCTTTAAACATTCTTTGTCTGATAA AATTGAAAGGCTGTAAAGTTTGGATTCTATGAATAGGTTTTGTCCTCCTCTTTTTAAAATTAATGGGAAATGATGTTACATTACACACACATATTTTTCT ATATCCTTTTATCTGCCATGTCTCAAGTTTTTGCTACTAAGCGGTGCTCGAATAGTGTTTTGCATGTATAATGCACTAAAAATGGGGTATCCACTATTCA GCTGATTGGGTAGGTATCTGGTGGATGCTTATCATCTCAAATCTTATAGTTGTTGACTTGTTACCATTAACTCAACTTCTACTAAATTGATCAAAGCCAC ATAGTGGCTTGCTGATAGGAGCCAGGAGTTTGAAGTGTGATAATTATGATTGCTATACTAACAATGGAGAAGTTTGAATTTGGTTGCTAACCATTACTAA AATGAAATAACATATAGATTGTAGTCGTAGAGATGTTTGTATCTAACATAATATACTTTAATGCAGTTGTCGGGGCCACTTTTGTAGTCTAACAGAATAT ACTTTATTTTGCATCTTAGGCTTGCAGGTGTCTCCATCTATTTGTCTTTTAGACTCCATCGTGCATTGCCATTTATGTGATTTGAATCTTATGTTATAAT CTCTTCCATAAAAAAATTATTCTATGATTTTTGGCATTACATACTGCACATTCTGTTGTCTGGCAGGTGATTTCATCTGCATGGTTTCTTCTATATCTCC CACTAAGCATTTCATAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCGGCTGAAAACCGGAGTATTCCTCCACTGAAATATGAATACTTTTAT GGTCTCTTACGTGACTTTCCTAACTTAACATTTACAATCAATGGTGGCATTACTAGTGTTGATGAGGTCAATGCTGCTCTTGAAGCTGGGGCTCATGGTG TTATGATTGGACGTGCAGCATACAATAACCCTTGGCATATTTTGGGACACGTTGATACTGCTATTTACGGTGAACCTAGCACTGGTCTTACACGTCGTCA GGTACTTGAAAAATATCAATACTACGGGGACTCAGTGTTGAGAAAATATGGACATAGGCCGACTGTGCGAGATATCGTAAAGCCTTTACTCCATCTTTTC CATTCAGCGCCAGGCAATGGACTTTGGAAGCGCAAAGCAGATGCTGCCTTTCGAAATTGCATGACAATCAAATCATTTTTTGAAGAAACTCTTGTTGCAA TTCCTGATTCGGTATTAGATTCGCCTGTGGCTGAACCACCTCCGGGCCGTGAAAATCTTTTTGCTAACATAGACAGTTTGCTGCCTGCTCCATACAGAAC AAGAGAAGAGATTGTTATTTGCGCTTAGGTTCACTTGTACACTACAAATCATTGGTGTTGTTGTCATTATCATTTCATTAAGTTTAATACAATGTAATTG CACCAGACTTTGAAATGTAAGCAATTGACTTTAAAGTGTAATCCATTGGAAATTTGTAAATTGCAATTCCTTGTAGCGTTTGCTTTTGCTGTGGAAATTT GTACTGAGTTCTAAACTGTTAAAAGTAGAATGCTGTGTGGCACATTTATTGTTTTAAAAAAAAAA BLAST
Tissuepods
Gene nameLI_gene_141140; 
Additional informationdetails; 

Expression of Ll_transcript_356278

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_356278
BlastptRNA-dihydrouridine(20/20a) synthase from Escherichia with 43.48% of identity
BlastxtRNA-dihydrouridine(20/20a) synthase from Escherichia with 43.48% of identity
EggnogCatalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity)(COG0042)
KeggLink to kegg annotations (c5018)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019412853.1)
PfamDihydrouridine synthase (Dus) (PF01207.16)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;