Ll_transcript_356255

• Id Trinity: TRINITY_DN45881_c0_g3_i2
• Name Transcript: Ll_transcript_356255
• Sequence: GTTAATTGCTTTTTCCTATCCTCTGCCTATCTACTGTTCGATAAAATGCCTCTTCTTACCATTCATTTCACTTTAATATTTTTTGGATAGGTACATTTCA CAGTGCCCACAAAACCAACTTATGTTGTTTCGATGAAAGGGATGATGAAATTTGCAGGATATTCCTTCCCATTTTCAATTCCTCCCATCACTTCTATTCT CACTCTAAACACTTGCAGATTCTCTAATAGTAATTTGTGTAGGCCAATCTTCTTTTCTGCTTACACTCAGAAACAATCATATCGTAAATCTCAATCTGGG GTTCTTGCAAAATGCTATCTTCCTCCTTCATTTAGTGTTGCTCCAATGATGGACTGGACAGACAATCACTATAGGACTCTAGCACGCATCATATCAAAAC ATGCCTGGCTTTACACTGAGATGGTTGCTGCTGAAACAATTGTTCATCAAAAGGAAAATCTGGATAGGTTCTTGGCATTTTCTCCAGACCAACATCCCAT TGTGCTTCAAATTGGAGGGAGTAATATCGAAAGTTTGGCAAAAGCAACTGAACTTTCTAATGCTTATTGCTACGATGAGATCAACTTAAACTGTGGATGT CCTAGTCCAAAAGTAGCTGGACACGGGGGCTTTGGTGCGAGTCTTATGCTTGACCCAAAGGTTAGAAAATCACTTTTAGTTAAACATGACCTGAAAACAG ATTGAATATATAAATATTCTTCATCAGTGTGCATTATATAGAAATCTAATGTATAAAAGGAAAGTTTGTTGCTGAAGCTATGTCAGCAATTGCTGCCAAC ACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTATGATGAGCTGTGTAAGGTCCTTCTTTAAACATTCTTTGTCTGAT AAAATTGAAAGGCTGTAAAGTTTGGATTCTATGAATAGGTTTTGTCCTCCTCTTTTTAAAATTAATGGGAAATGATGTTACATTACACACACATATTTTT CTATATCCTTTTATCTGCCATGTCTCAAGTTTTTGCTACTAAGCGGTGCTCGAATAGTGTTTTGCATGTATAATGCACTAAAAATGGGGTATCCACTATT CAGCTGATTGGGTAGGTATCTGGTGGATGCTTATCATCTCAAATCTTATAGTTGTTGACTTGTTACCATTAACTCAACTTCTACTAAATTGATCAAAGCC ACATAGTGGCTTGCTGATAGGAGCCAGGAGTTTGAAGTGTGATAATTATGATTGCTATACTAACAATGGAGAAGTTTGAATTTGGTTGCTAACCATTACT AAAATGAAATAACATATAGATTGTAGTCGTAGAGATGTTTGTATCTAACATAATATACTTTAATGCAGTTGTCGGGGCCACTTTTGTAGTCTAACAGAAT ATACTTTATTTTGCATCTTAGGCTTGCAGGTGTCTCCATCTATTTGTCTTTTAGACTCCATCGTGCATTGCCATTTATGTGATTTGAATCTTATGTTATA ATCTCTTCCATAAAAAAATTATTCTATGATTTTTGGCATTACATACTGCACATTCTGTTGTCTGGCAGGTGATTTCATCTGCATGGTTTCTTCTATATCT CCCACTAAGCATTTCATAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCGGCTGAAAACCGGAGTATTCCTCCACTGAAATATGAATACTTTT ATGGTCTCTTACGTGACTTTCCTAACTTAACATTTACAATCAATGGTGGCATTACTAGTGTTGATGAGGTCAATGCTGCTCTTGAAGCTGGGGCTCATGG TGTTATGATTGGACGTGCAGCATACAATAACCCTTGGCATATTTTGGGACACGTTGATACTGCTATTTACGGTGAACCTAGCACTGGTCTTACACGTCGT CAGGTACTTGAAAAATATCAATACTACGGGGACTCAGTGTTGAGAAAATATGGACATAGGCCGACTGTGCGAGATATCGTAAAGCCTTTACTCCATCTTT TCCATTCAGCGCCAGGCAATGGACTTTGGAAGCGCAAAGCAGATGCTGCCTTTCGAAATTGCATGACAATCAAATCATTTTTTGAAGAAACTCTTGTTGC AATTCCTGATTCGGTATTAGATTCGCCTGTGGCTGAACCACCTCCGGGCCGTGAAAATCTTTTTGCTAACATAGACAGTTTGCTGCCTGCTCCATACAGA ACAAGAGAAGAGATTGTTATTTGCGCTTAGGTTCACTTGTACACTACAAATCATTGGTGTTGTTGTCATTATCATTTCATTAAGTTTAATACAATGTAAT TGCACCAGACTTTGAAATGTAAGCAATTGACTTTAAAGTGTAATCCATTGGAAATTTGTAAATTGCAATTCCTTGTAGCGTTTGCTTTTGCTGTGGAAAT TTGTACTGAGTTCTAAACTGTTAAAAGTAGAATGCTGTGTGGCACATTTATTGTTTTAAAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_141140;
• Additional information: details;

Expression of Ll_transcript_356255

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0
• PS2: 0.2
• PS3: 0.1
• PW1: 0.1
• PW2: 0.5
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_356255

• Blastp: tRNA-dihydrouridine(20/20a) synthase from Escherichia with 43.48% of identity
• Blastx: tRNA-dihydrouridine(20/20a) synthase from Vibrio with 51.35% of identity
• Eggnog: Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity)(COG0042)
• Kegg: Link to kegg annotations (c5018)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019412853.1)
• Pfam: Dihydrouridine synthase (Dus) (PF01207.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;