Id Trinity | TRINITY_DN45881_c0_g3_i5 |
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Name Transcript | Ll_transcript_356260 |
Sequence | GTTAATTGCTTTTTCCTATCCTCTGCCTATCTACTGTTCGATAAAATGCCTCTTCTTACCATTCATTTCACTTTAATATTTTTTGGATAGGTACATTTCA CAGTGCCCACAAAACCAACTTATGTTGTTTCGATGAAAGGGATGATGAAATTTGCAGGATATTCCTTCCCATTTTCAATTCCTCCCATCACTTCTATTCT CACTCTAAACACTTGCAGATTCTCTAATAGTAATTTGTGTAGGCCAATCTTCTTTTCTGCTTACACTCAGAAACAATCATATCGTAAATCTCAATCTGGG GTTCTTGCAAAATGCTATCTTCCTCCTTCATTTAGTGTTGCTCCAATGATGGACTGGACAGACAATCACTATAGGACTCTAGCACGCATCATATCAAAAC ATGCCTGGCTTTACACTGAGATGGTTGCTGCTGAAACAATTGTTCATCAAAAGGAAAATCTGGTAACTTTAGATATTTAAATATGGTTATTTAACAGAAA ATAAGTAATGGGACTATGGACTATGTGAACAATTAAGACCACAATTGCAATTTTTGTAGCAGTATGAAATTTCCGTGATGAAAAATAACAAGCAATGGTT TATTTTTTGTGTATAAGTATATTGCTTAAGTCATAGCTGTGGGTGCATGTGTGCGCACAAGAGCGCTACTGAACGGAATGAGATTTGACACCATCATTTG TTGATAATTTGATGCTGGAAGGAAAACCATTGATTCTATTATTTTCTCTATTCTGCTCAGGATAGGTTCTTGGCATTTTCTCCAGACCAACATCCCATTG TGCTTCAAATTGGAGGGAGTAATATCGAAAGTTTGGCAAAAGCAACTGAACTTTCTAATGCTTATTGCTACGATGAGATCAACTTAAAGTTTGTATATTT CTTATCACCTTATATCTTAAGTTTCATTGTTCCATTGATCTCTGACAGAGTGTTTTCTTTAATATAAAAATCAGCTGTGGATGTCCTAGTCCAAAAGTAG CTGGACACGGGGGCTTTGGTGCGAGTCTTATGCTTGACCCAAAGGTTAGAAAATCACTTTTAGTTAAACATGACCTGAAAACAGATTGAATATATAAATA TTCTTCATCAGTGTGCATTATATAGAAATCTAATGTATAAAAGGAAAGTTTGTTGCTGAAGCTATGTCAGCAATTGCTGCCAACACAAATGTACCTGTCA GTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTATGATGAGCTGTGTAAGGTCCTTCTTTAAACATTCTTTGTCTGATAAAATTGAAAGGCTGT AAAGTTTGGATTCTATGAATAGGTTTTGTCCTCCTCTTTTTAAAATTAATGGGAAATGATGTTACATTACACACACATATTTTTCTATATCCTTTTATCT GCCATGTCTCAAGTTTTTGCTACTAAGCGGTGCTCGAATAGTGTTTTGCATGTATAATGCACTAAAAATGGGGTATCCACTATTCAGCTGATTGGGTAGG TATCTGGTGGATGCTTATCATCTCAAATCTTATAGTTGTTGACTTGTTACCATTAACTCAACTTCTACTAAATTGATCAAAGCCACATAGTGGCTTGCTG ATAGGAGCCAGGAGTTTGAAGTGTGATAATTATGATTGCTATACTAACAATGGAGAAGTTTGAATTTGGTTGCTAACCATTACTAAAATGAAATAACATA TAGATTGTAGTCGTAGAGATGTTTGTATCTAACATAATATACTTTAATGCAGTTGTCGGGGCCACTTTTGTAGTCTAACAGAATATACTTTATTTTGCAT CTTAGGCTTGCAGGTGTCTCCATCTATTTGTCTTTTAGACTCCATCGTGCATTGCCATTTATGTGATTTGAATCTTATGTTATAATCTCTTCCATAAAAA AATTATTCTATGATTTTTGGCATTACATACTGCACATTCTGTTGTCTGGCAGGTGATTTCATCTGCATGGTTTCTTCTATATCTCCCACTAAGCATTTCA TAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCGGCTGAAAACCGGAGTATTCCTCCACTGAAATATGAATACTTTTATGGTCTCTTACGTGA CTTTCCTAACTTAACATTTACAATCAATGGTGGCATTACTAGTGTTGATGAGGTCAATGCTGCTCTTGAAGCTGGGGCTCATGGTGTTATGATTGGACGT GCAGCATACAATAACCCTTGGCATATTTTGGGACACGTTGATACTGCTATTTACGGTGAACCTAGCACTGGTCTTACACGTCGTCAGGTACTTGAAAAAT ATCAATACTACGGGGACTCAGTGTTGAGAAAATATGGACATAGGCCGACTGTGCGAGATATCGTAAAGCCTTTACTCCATCTTTTCCATTCAGCGCCAGG CAATGGACTTTGGAAGCGCAAAGCAGATGCTGCCTTTCGAAATTGCATGACAATCAAATCATTTTTTGAAGAAACTCTTGTTGCAATTCCTGATTCGGTA TTAGATTCGCCTGTGGCTGAACCACCTCCGGGCCGTGAAAATCTTTTTGCTAACATAGACAGTTTGCTGCCTGCTCCATACAGAACAAGAGAAGAGATTG TTATTTGCGCTTAGGTTCACTTGTACACTACAAATCATTGGTGTTGTTGTCATTATCATTTCATTAAGTTTAATACAATGTAATTGCACCAGACTTTGAA ATGTAAGCAATTGACTTTAAAGTGTAATCCATTGGAAATTTGTAAATTGCAATTCCTTGTAGCGTTTGCTTTTGCTGTGGAAATTTGTACTGAGTTCTAA ACTGTTAAAAGTAGAATGCTGTGTGGCACATTTATTGTTTTAAAAAAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_141140; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_356260
Blastp | tRNA-dihydrouridine(20/20a) synthase from Escherichia with 43.48% of identity |
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Blastx | tRNA-dihydrouridine(20/20a) synthase from Escherichia with 43.48% of identity |
Eggnog | Catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of most tRNAs (By similarity)(COG0042) |
Kegg | Link to kegg annotations (c5018) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019412853.1) |
Pfam | Dihydrouridine synthase (Dus) (PF01207.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |