| Id Trinity | TRINITY_DN45885_c0_g4_i1 |
|---|---|
| Name Transcript | Ll_transcript_355764 |
| Sequence | GAAGAATTTTGTATATTTGTATATTTGTATATTTGTATGTGGTGTGGTGTCCGCAGCGCAGGAGGGTAAGGCAAGCTTACTAGCGTCTTATCCTGATGGC CATCACTTTGTGTTATGTTTCTTCGCTCTCTCTCTGAATTCATTATTTGAATTTATCTCTCTCTCTCTCTCTCTCAGCCATGTCCTCGTGTTTATTGCCG GATACTTTCACTTTCCGATACGCTCTTCTTCCATGTAGGTTATTCCTCATTTCTTATTATTCACTCAATTTCCCCAATCCCATTCTATTTCTCATTCTCA TTCTTATTCTCATTCTCATTCTCATTTCATTTATATTCCCATATGCAGCAGCAACTTCATCCATAAAAAGCAGAGATTTTATTGCTTTCCAGCCCCATTG TGTTTTATCAACAACTCCTTCACCCACTGCTCTTACTTTGGAAAAATTGGCACTTTCATCATCATCATCCTCCTCATCATCATCATCCCCATATCTTCCT TCATCCACACAGGAAAACTTCAAAGCAACCTTATCTACACAATCACTCCTTACTAGTGAAGAAAATGTAATAGCTGCTGCTGCTTCTGAAGCTGTTGCTC TTGCTAAAGCAGCTTTGAAAGTTGCAAAGGTTGCTGCCCTACTTGTTAAAAACAAGTCCCCACCAGAAGCAGCATATACACCCCCACATGATTCTTCCAA ATCTGATAATTTAATTCTTCTCAAATGGGTTCAACATTTGGAAGCACAAGAAGACGGTGTAGTATCTGATTCAGAAGAACATGTTTACAATGACATAAAA GAGGAGTCTGATGATACGGAACCCACCTATGAAGAACTTGAGCGTCTCAATCAGCAGCTCTCTGATAGTATAGCTGTAAGATCTACACGCCAAACAGAAA GAAAAGCTAAAAGAGTCAGAGCGGCAGAGAAGTCTGCCACACACATGGTTTCTTTTAAGTCCGGCTCAACCAGCAGGAAAAAGCGCGTTCCTACACAAGA AGTAGACTATTCTGATCCACTTCGTTACCTAAGAGCAACGACTAGCACTTCTAGGCTTCTCACTCCATCAGAAGAAATTGAGTTGTCCGAAGGAATACAG GACCTACTAAAGCTTGAAAAACTCCAGGAGGATCTCACAGAAAGATGTGGTAGCCAGCCCACGTTTGCTCAATGGGCTGCAGTGGCAGGGGTAGATCAGA AGACCCTAAGGAAGCGTTTAAATTATGGCATGTTTTGCAAAGACAAAATGATTAAAAGCAATATACGGCTTGTCATATCAATTGCAAAGGGTTATCAGGG TGCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTGGTAAGAGGTGCAGAAAAGTTTGATGCTTCCAAGGGTTTCAAGTTCTCCACC TATGCTCATTGGTGGATTAAACAGGCAGTTCGCAAATCGCTTTCTGATCAGTCAAGGACTATCCGCTTGCCATTTCACATGGTGGAGGCAACTTACAGAG TGAAAGAGGCTAGAAAACAATTGTATAGTGAAAATGGAAGGCAGCCTGATGACGAAGAAGTTGCTGAGGCAACTGGACTGTCAATGAAGAGGCTTAGTGC TGTACTTTTAACCCCAAAAGCTCCTAGATCTCTGGAACAGAAGATTGGGATAGACCAGAATCTTAAACCTTCAGTCTGTCCTAATCTTTATTCAATTTTA CACATTAGAAATAACTCATGTTGTTTCATATGATGTTCATTTTGATGATATATGCATGTTTCATTTTTGGACAGGAAGTAATCGCTGATCCTGAAGCGGA AACAGCGGAAGAACAGCTGATCAAGCAATTCATGAAGAAGGATCTTGAGAAGGTACTGGACAGTCTGAATCCAAGAGAGAAGCAGGTGATAAGATGGAGA TTTGGAATGGATGATGGAAGGATGAAGACGCTGCAAGAGATTGGGGAAAGCATGGGTGTGAGTAGGGAGAGAGTTAGGCAAATTGAGTCATGTGCTTTTA GGAAACTCAAGAACAAGAAGAGAACCAAGCATTTGCAGCAGTATCTCATTTCATAAACCCACCACCAAATATTATTCAAATTACAATGTTGGATGTGAGG TCTCTAGCCACTTTTGTTCTTCCTTTGTATTTTATTTCTCCATTTTTTACTTCATTCTCTACAAGAGAAAAACAAAACGTTATTGTTAGTGTATTAGGAA ACCGATGTACACACAAAGGGATAACTTTTGATGAAGAGTCCAGCATTTTTTAATGTACATGAAATGATTCAAACCAAATAAGACTCTTGAAATGAGTAAT ATTTTTCTTGAAGACTTAAATCAGCCAATATTGGTAAGTGCAAATACAATCATCATCATCATCTGCTTCATCACACAACACCACCACCACCAAAGAAGAG GCAGCTCCAACATCAACGTCCTCCCACTTCTTACAACCACCTTTCACACTCTCTCTTTTCCTTCCAAACCTGTCTGAGCATATTTCCACAAGTACAACTC AATGATGGTCACTACTAGTTCATGGCAAGCAAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_141167; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_355764
| Blastp | RNA polymerase sigma factor sigB from Arabidopsis with 60.54% of identity |
|---|---|
| Blastx | RNA polymerase sigma factor sigB from Arabidopsis with 71.88% of identity |
| Eggnog | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (By similarity)(COG0568) |
| Kegg | Link to kegg annotations (AT1G08540) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414778.1) |
| Pfam | Sigma-70 factor, region 1.2 (PF00140.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |