| Id Trinity | TRINITY_DN45931_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_392480 |
| Sequence | CTTTTTTATATGAATTGCATGATGTCTGTTCTTGTATTTTATATTGTTGATATCAATATAAACTTCTTGCAGATAGCAATAGTTGGCCGTCCAAATGTGG GCAAGTCAAGCCTTCTTAATGCGTGGAGCAAAGTATGTCACAGTCATTTTACGTATTCAATTATTTAATGTGATATTTTGTTCATTTATTGAATATTTTG TTTAGATATTAACCTTGGTGTAAGGAGATTGAAACCATTCACATAGTTGCTATAATTGGCTTCTGAAGTCTGCAGTGTAGGAATTGATAAGTGCTTGATA ATCACCTCAGTATTTTGAATTTTTTATTATTTAACTTATTGAGCATGGTGTTCTTGTAGCATGCAGAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAA CCACTCGTGATGTGATCGAAGCAAGTGTCAGCGTAAATGGCATTCCTGTAACCCTTCTTGATACTGCAGGCATCAGAGACACTGATGACATCGTGGAAAA GATTGGCGTAGAGAGGTCTGAAGCGGTTGCTAAGGGTGCTGATGTAATTATCATGACTGTCAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTA CTTGAAAGGATTCAATTATCTAAGAAATCAACCGGATCTTCCACTCCAGCTATCCTTGTGGTGAACAAGATTGATTGTGGTCCTTATGCTGAGACTGAAT GGGACGAAGAATGTACCAGTCTCAATTTCTTCAGTAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGCTTACAAGACTTAGAGAAGGCAGTATTAGA CATTGTGGGTCTTGATGCCATTCCTACCGGTGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTACGGACGAAGGAAGCGCTTGGAAGG TTAGAATCATCAATAAAGGATGAACTACCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTAGCCCTTGGACAGATAAGTGGAGAAGATATAT CAGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGCAAATAGAAGGAACAAGCCATATATATGTATGTGCTTGATGTTCTGCATATTTTCCA TTCATTTTTCAGCCATACATGTCATGCTAAATAACATTAAGGCCAGTTGCTTTCTCTCCACCATTTATTTAATGATATTGGTGATCGGTTCTTTATACAT TTCTTGTTTTGTTACTTACTCATCACCTTTTTTGGTTTGGATCCAAAATGAGTGCTCAGAGGAAAAGGAATTTGGTATCCTTAAGCAAAGGCTCGTGGCA AAGATACTCTATCCTTTTTATTTGGTGCAAAGAAAGGGTTAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_141387; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_392480
| Blastp | tRNA modification GTPase MnmE from Nostoc with 45.89% of identity |
|---|---|
| Blastx | tRNA modification GTPase MnmE from Synechococcus with 45.11% of identity |
| Eggnog | Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (By similarity)(COG0486) |
| Kegg | Link to kegg annotations (all4677) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438541.1) |
| Pfam | 50S ribosome-binding GTPase (PF01926.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |