Ll_transcript_392487

• Id Trinity: TRINITY_DN45931_c0_g1_i8
• Name Transcript: Ll_transcript_392487
• Sequence: GTTTACTTCACTTCGCGTAAATGTCTTCTTCTCTCCGCCTTGTCCTCCGTCACATATGCTTCCTCACTCCACCACCACGCTCCGCCATAGCCTTAAGTCT ACTTTACAACCGCCACGCCACGTGTCACTGTATATCTTATTCCAAACCCACACTCCCACTCTCCCACAACAAAGAGAGTAACTACACGCGAGTGGTGAAC AATGACGAACGGTTAAGGGTCCCACAATCCGTTAATCTTGAGAACACAGATGATAGCACCACAATTGCAGCGATTGTGACGTCATTGGGGGGCCCACCAG GTGCTGTAGGAATTGTTCGACTTTCGGGTCCTTCTGCTGTTTCTGTTGTAGCGAGAATCTTTAAGAAGAAGATGAAGAAGAATAAAGAGAAAGAGGTTAC GTGGAAGGTTAAAAGTCATGTGGTGGAGTACGGTGTCGTTTTGGATTTAGATGGGGATGTAATTGATGAGGTTTTGGTTGTGCCGATGCTGGCACCGAGG TCATATACATGTGAAGATGTTGTTGAGATTCAATGTCATGGGAGTGAAGTGTGTTTGCGCCGCGTGCTTAGAGCTTGTTTGGATGCCGGAGCAACACTTG CTCAACCAGGTGAGTTTACGCTTCGCGCTTTTCTAAATGGTCGTTTGGATCTCTCGCAAGCTGAAAATGTTGCAAGGTTGATTTCTGCCAAATCTGTGGC TGCGGCAGATGCAGCACTCGCGGGAATCCAGGGTGGTTTTTCTTCTCTTGTGAAATCGTTGAGAATACAGTGCATTGAGTTGCTCACTGAGATTGAAGCT CGTTTAGATTTTGATGATGAGATGCCACCTCTTGATTTGAACCTCGTTATGGATAAAATACATACCATGTCACGAGATGTTGATAATGCATTGGAGACAG CAAATTATGACAAACTTCTCCAATCTGGATTACAGATAGCAATAGTTGGCCGTCCAAATGTGGGCAAGTCAAGCCTTCTTAATGCGTGGAGCAAACATGC AGAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATCGAAGCAAGTGTCAGCGTAAATGGCATTCCTGTAACCCTTCTTGATAC TGCAGGCATCAGAGACACTGATGACATCGTGGAAAAGATTGGCGTAGAGAGGTCTGAAGCGGTTGCTAAGGGTGCTGATGTAATTATCATGACTGTCAGT GCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTACTTGAAAGGATTCAATTATCTAAGAAATCAACCGGATCTTCCACTCCAGCTATCCTTGTGGTGA ACAAGATTGATTGTGGTCCTTATGCTGAGACTGAATGGGACGAAGAATGTACCAGTCTCAATTTCTTCAGTAAACATGTGTTTACATGTGCTGTTACTGG TCAAGGCTTACAAGACTTAGAGAAGGCAGTATTAGACATTGTGGGTCTTGATGCCATTCCTACCGGTGGTCGCAGATGGACTGTCAATCAGAGACAATGT GAACAACTTGTACGGACGAAGGAAGCGCTTGGAAGGTTAGAATCATCAATAAAGGATGAACTACCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTG CATTAGCCCTTGGACAGATAAGTGGAGAAGATATATCAGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGCAAATAGAAGGAACAAGCCAT ATATATGTATGTGCTTGATGTTCTGCATATTTTCCATTCATTTTTCAGCCATACATGTCATGCTAAATAACATTAAGGCCAGTTGCTTTCTCTCCACCAT TTATTTAATGATATTGGTGATCGGTTCTTTATACATTTCTTGTTTTGTTACTTACTCATCACCTTTTTTGGTTTGGATCCAAAATGAGTGCTCAGAGGAA AAGGAATTTGGTATCCTTAAGCAAAGGCTCGTGGCAAAGATACTCTATCCTTTTTATTTGGTGCAAAGAAAGGGTTAAAACTCCATTTCAAGATTTAAGG AACAGGCCAATACATTGAAATAATGGACTCGAGCATCCATTTTTTAGTGCAATGGCATGTAAACATCAGATTTGGCAAATTATATACTTTATACAAAACT ATTCCCCTTTTAAGATCAGTAAAATAGTGATGCCATAATTCAATGAAGACTTTCCAATCCATCTCCATCCTAAAATGTCATACATTTATATTGTGGAAGA TTAAGACTCCTCTCCATTACCAGAGACAGCGGTTATTTTTTGTAGTCTATTTTTAAGGCTAAAATTGTAAATTTAATGTAGATTGAAGGTCATAAATGTC ATTATTTTTTTGGTTTGGAATACAATTTCTCATAACTGTCATCTCTAGTAATGGAGAGAAGTTTATCTCATTGTGGCATATTAGGGGTGAGCAAGACTTG ACCCTACTTGCTCACCTGGTTTGGTCTGATCATGAATGGATCTGAGTAGAGTTGAGTTTCATTGGTCTCTATTTAGGGTTAGGTATGAGATAAACATGAC ACTTTTCATCTCAGTTATTTACTCATCATGTTTGTATGTCAT
• Tissue: pods
• Gene name: LI_gene_141387;
• Additional information: details;

Expression of Ll_transcript_392487

FPKM

• PAB: 3.8
• PNAB: 1.8
• PS1: 1.8
• PS2: 0.8
• PS3: 1.9
• PW1: 2.3
• PW2: 1.3
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_392487

• Blastp: tRNA modification GTPase MnmE from Nostoc with 45.89% of identity
• Blastx: tRNA modification GTPase MnmE from Nostoc with 48.78% of identity
• Eggnog: Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (By similarity)(COG0486)
• Kegg: Link to kegg annotations (all4677)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438541.1)
• Pfam: 50S ribosome-binding GTPase (PF01926.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;