| Id Trinity | TRINITY_DN45962_c2_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_392401 |
| Sequence | TCTCTCTCTCTCTCTCTCTCTCTCAGTTCTGTGAGACTCAGCGGTGCTGTGGTGTTTAGCTCTGTCTATTAAGGTATGTTATCCAAAACCCAAAAAACTA TTTCCTCTTATTTCCACAACAACCCTAATCTCAATGTCGACCTCAACCGCATTGTAACAAGAACCATATCTAGCCTCAAAGTGGAGTGGCGCAAAGACCA AAACCTCGACAAGGCCATCCAAAATGATAAGCGTTACAAGCAATGTGCACGTGTCGTTAAAGAGGTTCTCAACGAACCTGGTCAAGTTATCCCTCTCCGC TACCTCGAAAAACGCCGTGAAAGGATGCGACTCAAGGTTCGTGTCGAAACCTTTTTAAAACAAAACCCTGGTTTATTTGATGAATACTATGATAGAATTA AACCCAAAACCGAACCGCTTCGGTTTCTCCGGGTCACTGACCGGCTTCAGAACTTTCTAGAAGAAGAGAAAAGAATCTTTAAGGAGAATGAGAACTTTAT TGTGTCCAAGTTGTGTAAACTGCTGATGATGTCTAAGGATAAGGTTGTGAGTGCTGATAAGTTGCTTCATGTGAAGAGGGAATTTGGTTTCCCTAACGAC TTTTTGGTTGATATAGTTCCTAGGTACCCACAGTATTTTAGACTAACTGGTTCTCCCGGTGAAGGGAAGTCGTTTCTAGAATTGGTATCGTGGGAGCCAG AGTTTGCGAAATCGGTTATTGAGCGGAGGGCTGAAGAGGAGAGTAGGTCTATAGGGATAAGGGTTAGGCCTGGTTTCAATGTGAAGCTTCCACCAGGGTT TGTGTTGAAAAAAGAGATGAGGGAGTGGGTTAGGGATTGGGTGGATCTTGATTACATATCGCCGTATGAGGATGTATCACATTTGGATCAAGCTTCGAGG GAGATGGAGAAGAGGTCAGTTGGTTTGTTCCACGAGCTGCTTTCGCTTTCGTTGTATAAGAGGGTTCCAGTGCCGACTTTGGGGAAGTTTTGTGATGAAT ATAGGTTTTCAAATGCATTTTCTAGTGTTTTTACAAGGCACTCAGGCATATTTTATATGTCATTGAAAGGAGGGATAAAAACAGCAATGTTGAGAGAAGC ATACAGAGGTGATAAGTTGATTGATCTGGATCCACTGCTTGAGATAAAAGATAAGTTCAATGAGTTGTTGGAGGAGGGTTGGCGGCAAAGAAAAGAGCAG ATAAGGTTGTACCAAGAGAAAATTAGGAAAGGCATGGTAGTTTTGGCTTCGAAAGTTAGTGAGTAGAAGTATAAAACATGCATGTGGATGTGAAAAGCTT TCGATTTGAAGTGTTTGACATGGAAAAAGCTTGACCATTTCTGGCTTGTACGATTGCTAATCTTGAGTTGTATGTATTCTTTTTGAATAATTGAATAGTT GTATCTTCATACCCGTTACTGAAAATGCTTCAGTAGAAGTTTTTGGCTTAGCCATTCATCTATGGATCAAATTTCTTGATGCTTATATCGTTGAGACCAA TGATGCAATGTCATGTATGCAAGGTAGAGTAGAGAAGGTTGTTGTTTAAAAAATATTGTCTTTTGCTTGTAGTGGTGTTAACAGGTAACCTGATTTTTAA ATCATAGAAATCAAAATATTACATTCCTTGGTGATGTTTGAAGCTGATTGTTTCAACTTAACACAACCTAGGTAGAATTCATATATCATAAACTTGCCCA TATTGCAGAAACCTTACTCATCCCAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_141550; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_392401
| Blastp | Protein ROOT PRIMORDIUM DEFECTIVE 1 from Arabidopsis with 27.76% of identity |
|---|---|
| Blastx | Protein ROOT PRIMORDIUM DEFECTIVE 1 from Arabidopsis with 25.88% of identity |
| Eggnog | Plant organelle RNA recognition domain(ENOG410YAEM) |
| Kegg | Link to kegg annotations (AT4G33495) |
| CantataDB | Link to cantataDB annotations (CNT0002600) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428346.1) |
| Pfam | Plant organelle RNA recognition domain (PF11955.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |