| Id Trinity | TRINITY_DN45969_c1_g2_i16 |
|---|---|
| Name Transcript | Ll_transcript_392963 |
| Sequence | AAGTGAGGCCCATTGAGGCCCATGTTGTGAGAGTTGAGGCCCAAGAAAAGGTGGAAAGGATAGTGGCAACGGATAAGTAAGGGTGATTTCTTACTCCATT ATTATGTGACCCTCATGGCTTCTTCCCAAATCCTTCTTCAGGTTTTCTGCTCTATCAAATACTTCCTTATTGTTATTATTATTTAGCATTTACAACTTTG GTTTATGTATGTATTAATTTGGGAAAATTGCAATGACAGAGGTTTGTGATACCACAAAATCCGATTTCGAAAGTGGGTTTTGTTTCTTGTTGTCCCACCT CTCGTCTGGGTTATGGTAACACCCCCTTCACTTCAATTTCATGGAGTCACAGTATTCAGAAACATAGGGCTGGTTTTGTTGTGAGAGCTGAGTCTGAACC CCAAGAAAATGCCCAAAATGTAGAGCAAGAAGCGCCTCCGATTGATGTTGAAGAAGAACAAGAAAAAGAAAAGGAAGTTTCAGAATCCAAGCCTGCGAGA AAACCTCGAGTGAAGCTTGGAGATATCATGGGGGTAGTTTTGTCATCCCATTTTCTTGCCTCACCTTGTATCTTACTATTACTATTGACATCAGTTACTT GCTACAACCACACCGTTCATCACTTTTTACGTTAATTTCATGTGACTTTTTATGATGAACATGGTGAATTCGGTTTATACATATGGTAAACGAGGGATTA TGGTATTTACCAATTAATACAATGTTCACAATATTTGGATAATATTTGACACAGTATTTCAAGTAAGCACACACACACACAGATATATATATATATATAA GGAACATGATTTAGAGGAAGTAAAATAGCAATTTTTTCGTTTAATTGGGAAAAGGATAGATTAGCAACAAAAGTTGATGTTTTGCCAGGATTGGTGAGTC AGTGGCCTGTATTTGAGTGATATTATGTACCTACCTACTAATCATGCGTGTTACCGGTAAAGTGCTCATGTGTACTCTAAGTATTAGTACTAGGTATGCA CATGAGAATGGCACACCTACCATTTTGGTGTACCCATCATCGTAAGTTGCCGCATCAATTGTTTGATGATGAAATGAGTTGTTTTGCGACAATATGGTCT ATGTTGATTATGAAGATTCAGTCATGTAACCAATTCCTTAGTCCGAAGGCTATGCTTCCAAGTTATTAAAACTTGGTGTTTTCAGTCTGTAGTTAGGTTT TCCTACTCCACATTCTTTCAAGATGTGTTGTTACATTCTGTGTCGACATCAACCAGTCAGTATTGGGTGAGTTCTTAAATTCTCGTTGTTCGTGCAGATA CTGCATAAAAGGGCAATTGAGGCATCGGAAAAGGAGAGGGCCACTCCAGATATTAGGACCGGAGATATTGTGGAAATCAAATTGGTATTTTTTTCTCGTA TGTTGTTTTTAATATGTTGCCTACTTGCCTGGGATGATATGAATTGCACACTGATCTATTTTTTGTCCTATATTTAGGAGGTTCCTGAGAACAAGAGAAG GTTATCCATCTATAAAGGTATTGTTATCTCAAGACAAAACTCTGGCATTCACACAACTATTCGAATCCGAAGAATTATCGCCGGTGTTGGGGTTGAGATA GTCTTCCCAGTGTAAGTTTCCTCCTTTTTGGAACTTAATATTTAGAGACTGTTCATGTCATTTGTACTAGTCAATGTTTCTTTTGGCTGTGTTTCTGTGT ACGCAATTGTTATAGTGGGATATATAAGCTTGAAAGAGAGACAGAAATTTGGGGTTAATATTGCTTTCTTCATTTTCACTTCATGTTTAAGTGGCATTAC ATCATTAAAAACATGATATCATTTGGGGGAGAGGGGAAATTAAGTCAACTACTACCACGTATAATACCTATATTATGTTGTTGACAATGTGCTACTACTG GTAATTGTGCACCTTTTGAAAGCTCAAATTGTTTAGAAATTGGTTGAGGACTAGGAGGACTCAAGCTAACCTTGTTCTAGAATCCGTACGCATCTCAGAT TGTTACAAATTTGGATTCACTTATTTCCATTTCAGTGTTGTAACTTGTAAGAAAATTAGAAAAGCATCTCCTCTACCATTCTGTAATGTTGGGAAGCCAA CCTGAATCTGAACTCTGAAAATATCTCTCCTCTCTTTAAGTATGGAGGGTGAGATTTCCGTATATGTTTCAAGGTGTAACCTGATAAAAGCAATGTTTGT CTGCATAATTCTTGTCTTAAGTCTATGTTGTATAATAAAAATTTATGAAATCAATATTAAGATTGAAATTTATTTATCAAAGTAGCCAAATGCTTCACTC ATTATGTTACTGATTGATGGTTAAGATCAAAGTATTTTTCATATCCCTCTGCTATGATGCTTATTTTCCCTGCCACAGTTACTCACCAAACATCAAAGAA ATCAAAGTAGTGAACCACCGCAAGGTCCGGAGAGCAAGATTGTACTATCTACGCCACAAGCTTCCCAGACTCTCCACTTTCAAATGAGATGCCAGTGACC CACTTTTCATCTTTGAAATGGTATGCTGAAGTGTCAGAAGTGATTGCAGAGCCATATTTTGATTTCTTTTTTCATTTTGCTGTGTTGTAAAATATGTAAG TTTTCTTCACTTTAATTTATTCTCCTGAAATGGAAACAAGTGTAGTTGCCCTTCATAAACTTGAGAAATTCTTCTGCATTATTATTATTACACGGTAGAA AGCCAAGTTCTGAAGAAAAGTACATGCTAATATTGCCATGTCCGAAAGGGATTATGGAGAACTTATTTGGCTTTATCATATACACATGTAAGCAAGTTTT TTTGGGAGAGATTATGAATATAAATGCTTTTTATTTGATGTCAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_141586; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_392963
| Blastp | - |
|---|---|
| Blastx | 50S ribosomal protein L19-1, chloroplastic from Arabidopsis with 54.87% of identity |
| Eggnog | This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity)(COG0335) |
| Kegg | Link to kegg annotations (AT4G17560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445029.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |