Ll_transcript_392966

• Id Trinity: TRINITY_DN45969_c1_g2_i18
• Name Transcript: Ll_transcript_392966
• Sequence: AAGTGAGGCCCATTGAGGCCCATGTTGTGAGAGTTGAGGCCCAAGAAAAGGTGGAAAGGATAGTGGCAACGGATAAGTAAGGGTGATTTCTTACTCCATT ATTATGTGACCCTCATGGCTTCTTCCCAAATCCTTCTTCAGAGGTTTGTGATACCACAAAATCCGATTTCGAAAGTGGGTTTTGTTTCTTGTTGTCCCAC CTCTCGTCTGGGTTATGGTAACACCCCCTTCACTTCAATTTCATGGAGTCACAGTATTCAGAAACATAGGGCTGGTTTTGTTGTGAGAGCTGAGTCTGAA CCCCAAGAAAATGCCCAAAATGTAGAGCAAGAAGCGCCTCCGATTGATGTTGAAGAAGAACAAGAAAAAGAAAAGGAAGTTTCAGAATCCAAGCCTGCGA GAAAACCTCGAGTGAAGCTTGGAGATATCATGGGGGTAGTTTTGTCATCCCATTTTCTTGCCTCACCTTGTATCTTACTATTACTATTGACATCAGTTAC TTGCTACAACCACACCGTTCATCACTTTTTACGTTAATTTCATGTGACTTTTTATGATGAACATGGTGAATTCGGTTTATACATATGGTAAACGAGGGAT TATGGTATTTACCAATTAATACAATGTTCACAATATTTGGATAATATTTGACACAGTATTTCAAGTAAGCACACACACACACAGATATATATATATATAT AAGGAACATGATTTAGAGGAAGTAAAATAGCAATTTTTTCGTTTAATTGGGAAAAGGATAGATTAGCAACAAAAGTTGATGTTTTGCCAGGATTGGTGAG TCAGTGGCCTGTATTTGAGTGATATTATGTACCTACCTACTAATCATGCGTGTTACCGGTAAAGTGCTCATGTGTACTCTAAGTATTAGTACTAGGTATG CACATGAGAATGGCACACCTACCATTTTGGTGTACCCATCATCGTAAGTTGCCGCATCAATTGTTTGATGATGAAATGAGTTGTTTTGCGACAATATGGT CTATGTTGATTATGAAGATTCAGTCATGTAACCAATTCCTTAGTCCGAAGGCTATGCTTCCAAGTTATTAAAACTTGGTGTTTTCAGTCTGTAGTTAGGT TTTCCTACTCCACATTCTTTCAAGATGTGTTGTTACATTCTGTGTCGACATCAACCAGTCAGTATTGGGTGAGTTCTTAAATTCTCGTTGTTCGTGCAGA TACTGCATAAAAGGGCAATTGAGGCATCGGAAAAGGAGAGGGCCACTCCAGATATTAGGACCGGAGATATTGTGGAAATCAAATTGGTATTTTTTTCTCG TATGTTGTTTTTAATATGTTGCCTACTTGCCTGGGATGATATGAATTGCACACTGATCTATTTTTTGTCCTATATTTAGGAGGTTCCTGAGAACAAGAGA AGGTTATCCATCTATAAAGGTATTGTTATCTCAAGACAAAACTCTGGCATTCACACAACTATTCGAATCCGAAGAATTATCGCCGGTGTTGGGGTTGAGA TAGTCTTCCCAATGTAAGTTTCCTCCTTTCTGAAACTTAATATTTAGAGACTATGTTTTCTATGTATGCAATTGTTGTACTAGAGTATACAATTTTCAAT CAGAGAGATAGAAATTTGTTATTAATATTCCATTCTTACTTTTCACTCATGTTTGATTCAAGGTGGTTGTCGTCTGCTAATAAACATGCAATGATTGTCT GCATAATTCTTGTCTTCCGTCAACGTTCCGTAATAAGAATTTATGAGATTATCATTTTAAGTTCTAAATTTATTTATTGAAAGTAGCCAAATGGTTCACT TATTAAGTTATCCATTGATATCTAAGATCAAAGTAATTTTTCATATGTGTAGCATATATTATGAGGTGTGTGTCTAGTTGTATACCAGATTTTTATTGTG AGATGCTGTCTTCTATGATGCTTATTTTCCCTGCCACAGTTACTCTCCAAACATCAAACAAATCAAAGTAGTGAGCCACCGTAAAGTTCGGAGGGCAAGA TTGTACTATCTACGCGACAAGCTTCCCAGACTGTCCACTTTCAAATGAGATGCTAGTTACCCACTTTTCATATTCTAAGTTGTATGTTGAAGGAAGTGGC AGAAGTGATTGCAGGGCCATATTTTGTTTGTTTCGTTTTGTTGTGTTGTAGAGTATGTAATTTTTATTCATCTCAATGTATTCTCCGTGATATGAAAACA AGTGTAGTTGCCCTGGGTCAACTTGAGAAATTTGATGTTTCTTCTGAATTATTCTGTAATTATTTTATGGTCGAGAGCCAAATACTGAAGAAAATAGTGC ATCGCTAACGTTGCCATGTCCGAAGAGTTTATATGGAGAACTTATTTGGTTTTATCATATATACGTGTTATTTGGAAGTGTTTAT
• Tissue: pods
• Gene name: LI_gene_141586;
• Additional information: details;

Expression of Ll_transcript_392966

FPKM

• PAB: 0.2
• PNAB: 0.7
• PS1: 0.2
• PS2: 0.2
• PS3: 0.2
• PW1: 0.1
• PW2: 0.4
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_392966

• Blastp: 50S ribosomal protein L19-1, chloroplastic from Arabidopsis with 34.23% of identity
• Blastx: 50S ribosomal protein L19-1, chloroplastic from Arabidopsis with 54.87% of identity
• Eggnog: This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity)(COG0335)
• Kegg: Link to kegg annotations (AT4G17560)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445029.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;