Ll_transcript_392954

• Id Trinity: TRINITY_DN45969_c1_g2_i8
• Name Transcript: Ll_transcript_392954
• Sequence: AAGTGAGGCCCATTGAGGCCCATGTTGTGAGAGTTGAGGCCCAAGAAAAGGTGGAAAGGATAGTGGCAACGGATAAGTAAGGGTGATTTCTTACTCCATT ATTATGTGACCCTCATGGCTTCTTCCCAAATCCTTCTTCAGGTTTTCTGCTCTATCAAATACTTCCTTATTGTTATTATTATTTAGCATTTACAACTTTG GTTTATGTATGTATTAATTTGGGAAAATTGCAATGACAGAGGTTTGTGATACCACAAAATCCGATTTCGAAAGTGGGTTTTGTTTCTTGTTGTCCCACCT CTCGTCTGGGTTATGGTAACACCCCCTTCACTTCAATTTCATGGAGTCACAGTATTCAGAAACATAGGGCTGGTTTTGTTGTGAGAGCTGAGTCTGAACC CCAAGAAAATGCCCAAAATGTAGAGCAAGAAGCGCCTCCGATTGATGTTGAAGAAGAACAAGAAAAAGAAAAGGAAGTTTCAGAATCCAAGCCTGCGAGA AAACCTCGAGTGAAGCTTGGAGATATCATGGGGGTAGTTTTGTCATCCCATTTTCTTGCCTCACCTTGTATCTTACTATTACTATTGACATCAGTTACTT GCTACAACCACACCGTTCATCACTTTTTACGTTAATTTCATGTGACTTTTTATGATGAACATGGTGAATTCGGTTTATACATATGGTAAACGAGGGATTA TGGTATTTACCAATTAATACAATGTTCACAATATTTGGATAATATTTGACACAGTATTTCAAGTAAGCACACACACACACAGATATATATATATATATAC CATAAACCCATCTTCTTGTTTTCAACTTTCATCTTTTCTAAACTATACTCCAAACCCATCTCTTCTTGTATGATGTTAATCAAGTTTATATAAAAAATGA AAACATATATTTTCAGTTATCCAACACCCTTTCTACTTCACTTGCCACTTCGTGTTTCATTTATTTAAATGCTAAGCTTCATTCAATGACAAAAGGTCTC TTTATGTTCCTCACTTCAATTAAACTCGACAAAGATACCACTCCATTATTTATTTATATATTTTCCCTCTTTATATTTCTTAATAATAATAATACTACAG CATGCAAGGTTTACCAAGGTTGGAATAATAGACGTATCACTATAACAACGCTCGCTTATTTATTGAAATCACCTCATCCATGCTTTCTCTAAGAACGACC GTTACTATATTATTTCATAAATATTTATCACAACTCTTTTCTCTTTTTCTCAGCATCGTAGTTTCTTGTTTTCACTTTGGTCTTTATATAATCTAGTAAC TCACACTTAACAAAGCACCTTTCAAAGTGTGAAACCATGAAGATGGGGTTGCTGTCTTATAGAGTTGTAATAGTGTTGTGTATTATGGATTTGATGATGT GGGCTCAGGTGGATTTAGCAGAAGGTGGTGCTAGGAATTATATTAGTTGGGATGATTTGAAAGTTGATGAACAAAGATTGGCATTGAAGAGCAATAATGA GATTAGAGTTATTGTGGTTGATCAGTATGGAAAAGGACATTCAAAAACTGTTCAAGGAGCAGTGGATATGGTTCCAGATTACAACACTCAAAGGGTCAAA ATATACATTTATCCTGGAGTATACAGAGAGAAGGTGCTTGTGCCAAAGAACAAGCCTTATATTTCTTTTGTAGGCAAAAGAAATGAAACATCAGGTGCTG TTATTACTTGGAACAGTAAGTCATCAGATAGAGGTCCAGATGGCCAAACATTAGGCACTTATGGTTCAGCAACTGTAGGAGTAGAATCAGATTATTTCTG TGCAACTCAGATCACTTTTGAGAACTCAGTAGTTGCAGCACCTGGTGGAATTGGAATGCAAGCTGTGGCATTGAGGGTGAACAGCAATAGAGCCATGTTC TATAGAGTTATGATCAAAGGAACACAAGACACCCTCTTAGACAACTCAGGAACACATTACTTCTTCAGGTGTCTCATCCAAGGGAAAGTTGATTTTATCT TTGGCAATGCAAAATCACTATATGAGGTAACATGAGCCTATTATTTGATACTGTAGTAAAACTAGATACCAAATATAAATTCATTTTTTTTGTTGCAACC TGCAAGCAATGGAACTATGAGTAATTCTAACATTTGAGAGGTTGGTGACCAGCAATGCCATCTTCAATCAATAGCTGAAAACTATGGAGCTATAGCTGCA CATCACAGGAATTCACCACATCAAGATACAGGGTTTTCTTTTGTAGGATGCAGGATTAGAGGAACTGGAAATGTGTATCTTGGTAGAGCATGGGGTGACT ACTCAAGAATAATATATTCTAATACTTATATGGATGATATTATTAATCCAGCAGGGTGGTCAGAATGGAATCATCCAGAAAGAAAGTGGACTGCAGTGTT TGGTGAGTATGAATGTGAAGGTAGAGGAGCAGATAGAAGACATAGGGTGCCTTGGTCAAAATCATTTAGCTATGAGGAAGCAAAGCCTTTCCTAGACAAA AGATTTATAGATGGAGATCAGTGGCTTAGACTGTAGCAGCATTAAGTTGCTCCAATTACATCACATAACATATATAATTCCTTTATTTATGTCCTTGTTT ATTATCTTAGAGATGAGGATTTTTGATGTTTTTATTTTGTACCTGTGATAAGTTACTACTAATACAAGTCTTGCATGCTCAATCTGCATGTAGCATAACC ATAATGAATTGAAAGTTTTCTGCA
• Tissue: pods
• Gene name: LI_gene_141586;
• Additional information: details;

Expression of Ll_transcript_392954

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_392954

• Blastp: Pectinesterase QRT1 from Arabidopsis with 56.88% of identity
• Blastx: Pectinesterase QRT1 from Arabidopsis with 52.97% of identity
• Eggnog: pectinesterase(COG4677)
• Kegg: Link to kegg annotations (AT5G55590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456029.1)
• Pfam: Pectinesterase (PF01095.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;