Id Trinity | TRINITY_DN45971_c0_g1_i1 |
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Name Transcript | Ll_transcript_393275 |
Sequence | TTTAAAAGTTTTTTTTTTAACTTGTCCTCCCCCAAATCATTTGAAAAAATAAAAAAAATCCTTATTAAGCTATTTCACAAACTTTAAAACTAAATCCTTT CATTTCCACACCACCGCAAATCTTAGTATCCACCGTCGCCAACCGTCGTCCTCTGTTCCCCACGCGCCACCATCACTTCTTCACCATATCCAACACTTTC TGACTTGTTTCCATCATTGGCTATGGATTCATACACTCCTCTCTTCGAAAAAACCAAACTCCCTCAACCTTCACTTCAACGACACGCCGTTATCTCCATC TTCTCCAAACTCCGTTCTTCTCCCAAACACCTCAACGCCGATTCCGAACCCGGTCACCACGTCATCACTCAATGTCTCACCTCTCCGTCTATTAACGTCG TTGATCAGTCCGTCAGGGAACTTTGCCGTCTTGTAACTGATTCCGTTGTCGCCGTTAATCGCGGGTTGTTGGAGCTTCAATCTGCACTTGAAGGATCCGA CCCGATAACTGTACCCGTTTTTGTTAAGGGTTTGGGTTTTCTTGTTCGGTTTGGTTTTCAGAAGAGCAATGCGTTGTGGTACTTTAATTCCACTGAGGCT CACCCTTTTGTTAAGGTATTGTCATGCCGGTTGGAAGTTCAACCAGAACTCCTGCAGCAAGTGTGTCTGTTTATGTTGCAGAATAAGCAGCTGGGAATGG TGAAAGTATGTCAATTTTTAAGGCCCTTGGTGAATTTCTCAATCATAAGATTATTCGTTTTGGAATCGTCCTTGTCTTCATTTACAATGCAACTGGTATC GTCTTTGGTGTCATTTTGTTGCTCCTTTCCATCAGAGTCCCTGCCTGTTTTTAAGCTGCTAAAAGGATGCCTTAAGTATTTTCCACAGAAGACCTCTGAT GACTACAGGAAATTAATATTTGTTGTAGAACATATGGTGGAGGCATATATCATGGTACTGAAATCTTTGGCTGGAAGGAAATCGCTGATTACTGAGGTTC AACAATGTGCGGTTGAATTTCTGGAAACAATTTTTTCTCTGTCCACTTGTCTTCTGTGCCAGCCTGGTGGTAATGAACCCATATTTGAACTCTCAAAGCG CTTGTTGTCTGTACAGCACGATCTTGGATTGAGATGGGTGCCTCGATTGTCATCAACTATGGTATCATTATTCATGATTCTTGTTAAATCAGAGCTTGAG CATGAACAAATTTCTATGTTGAAACTCCTTCTCTTAATCCTGAAGTGGAAATACAACAATGTTACTAATGCAGATGATGCTATCAGCAGAAGTAAATCCA CTTCAGTTGAAGAGATTTTGTTTGTACTTCCCGTCATCAACCTTATGTCATCTCCTTCAAAATCTGTGAAAGGATTGGCTATTGATTTCCTTCTTCTCTT AGAGAAGCTCCTTGTAAAGATGATTGCGGTGCCGACAGATAAACTAGTCGTTGAGGATGGAGTTCATTATCTTAGCACACCAGGAATTATAGTTTCAAGA ACTCTGCGACTTCTGTGGTATCAGGATGTAGAATCTTCTTCCAGAATTTCCCTTCTGAATTTCGCTCCAAATGGCCTTAGTGATGGCGAAAGGATGCATG GTCAATCAATATCTTGGGTTTCTCAAGTAAGAGGGTTTTGTTTGTCAATTATTGACCAACGAAAATCTTCCTTACCTCTCACACATTTTCAGGAAGTATT TTTTAATGAGATGCCCTCGTTACTCACTGCTGTTATTGGTGTCTTATTGATACATCCATCAATGGGGGCTGCTGCTGTCAATTCTTTATCTTCCATGGCT ATTATGGATCCCAAACTGGGGGTTCCTTTGTTGCTAACAATTATGTTTTACAGTAATATATTCATAAGAAAAGATGTCGTTAGACATGATATGCTGCTAA AGATTTTTGAAATGTTGCCATCACTTGCTTCACACTCAGCAATGGTTCCACTTGTAGTTCAAACTATCTTGCCAATGCTTTACAAAGATGCAAAAGTCTC ATTATATTCTACAGCCACTCGATTGCTATGTCAGACTTGGGAGACCAATGACCGAGCTTTTACAAGTTTGCAAGGTGTGTTGCTTCCTAAAGGGTTCACG GATTTCAAGTCAGATAGAGCTATCTGTATCAGCATGGCTGCTTCCATTCGAGATGTTTGCCATAAAAGCCCTGATAGGGGTGTTGACCTTATCTTATCCG TTTCGTCTTGCATTGAGAGCCAAGATCCTGTAATTAAAGCTCTTGGCTTACAAAGCCTTGCCCACCTTTGTGAAGCAGATGTCATTGATTTTTACACTGC ATGGGATGTCATTGCAAAGCATCTGCAAGGTTACCATGCTGATCCTATTATTGCACATAGCATTTGCCTTCTACTAAGGTGGGGTGCAATGGATGCAGAA GCATATCCTGAAGCATCAAAAGGTGTGGTGCAAATTATATGGGATGTAGTTACTTCTAATCAAGACATACAGTGGGCAAAAGCAAGAATTTCAGCCATTG AGGCACTCACCCAATATGAAGTATCACAGCTTGAAAAAAGCATTCCAGATTTTAAGAAAAGGAATTTGGAGTTGTTATTTTCTGAGAAAAATTCTGAAAT ACTGAAGGTTATGGAAGATTTTCAAGTCAAGATAGTAACACACGAGCATATAAATCGCCGAAGATTAGTAAAGGAGAAAAGAGTTACAACAGGAAGTAAA ATTGAAAAGTTGATGGCTGTGTTCCCCCAGGTTATATTCTCTTCAGGGAAGGTAAATGAAGCTAGAGAATTGCCCGGTGCAGCTTTGTTATGTTTCACTC TTACTCATAAAGATGTGGATGAACTTCAGGCATCAAAAAGGATGAGAGATGTACATGCTGGGTATGAGAACACTCTGGTGGAAATAGCTTCTTCTCTTCA GCTCTCAAGAAATATCTTGCTTGCACTTATGGCGTTCCAATCATGGAAAGGCTTCATGCGACGTTGGATGAAGGCTGACATTCAATCCTACGAAGCTAAA GCACAATCAAGTGTCCAGGACAAAACTTCTAAAGCTGCGAGTAATATTCTAAAGAGTGTGGTAGCAATAGCAGATGAAGCTATACCTAGAGCTGCTGAGA ACATTGCACTGGCTATTGGTGCACTCTGTGTGGTTTTACCTCCATCTGTTCATACTGTTAAATCTGCTGCTTCAAAATTTCTTTTAGAGTGGTTGCTCCA ACACGAACACGAACACCGTCAATGGTCTTCGGCAATCTCTCTTGGATTAATCTCAAGTTGCCTTCATGTTACCGATCATAGACAGAGATATCATAACATC ACAGGACTTCTTGAGGTTCTTTTTGTTAGCAAAAGTTCACTTGTAAAAGGAGCATGTGGTGTTGGATTGGGTTTTTCATGTCAAGATCTTCTTACCAGGG TTGAAGCTGCTGATGACTCTGCTGTTGAAAAAGAAAAGGACAAGGTTCCAGAATCTGAATTACTTGGAAGAATTGTTAGGGCCTTGGCTACTATGCTACA TGATAGAACTCAATCATCCTCTGATGTTTTGGATAGTCTATGTTCATGCTTTCCACCTGATTCATATGATATGAATGCTAAAGTATTTGAACCATTCTCT GAGAACAATGAAGACTTGGAAGAAGATATATGGGGTGTCGCTGGACTTGTTCTTGGTTTGGCTACCTCCATCAGTGCAATATACAGAGCGGGAGAGTTAG AGGCTGTTATCATGATAAAAAAATTAGTAATATCATGGCTTCCATATGCAAATTCTCTACTTCAAGGCAGTAATTTCCTAGGGGAGGAATCCGATACTGT TTTAGCGATAGGTTCCTGTATTGCACTTCCCACAATATTGACTTTTTGCCAGAGAATGGAATTGATGGATGGTATTGAGTTGGACAACATTGTAGCCAGC TTTAAAGAGTTGATTTCTGAGTTAATCTCTATGAAAAAGTCTGGCATTTTGCACCAGAGTTTGCTTATGGCATCATGCGTTGGTGCAGGGACAGTAATTT CCTGCATACTGAATGAAGGTGTTCATTCTATTGAGGTTGACTGTGTTAATGGTTTGCTGGAACTGTTCAAGACATGTTACTCCAATCCTTTTCCTTCTCT TGTTCATCTGGGTGGTATGCTAGGAGTTGTGAATGCTATGGGAGCAGGGGCAGGGATTTTGGCGAATATGAATTTTCCAAATTACACTAAGCATTCTTGT TATGAGAAGAAGGAATATTCTTCTGTTACCGGTCCTCTCCTAACAGTTTCAGTCTTTGAACCATACTTGACATCATTGGTGCAAGAGATGTTTCTTGTGG CACAGAATTCTGATCATCATCAGCTACAACAGTTTGCTTCTTGGGCACTCACCTTCCTTCGGCAACATTTATGGTCCAAGGAACATTTGAGTGTTGATGG TGATAGTAATGTGGCGGAAACTAATTCAAAATCTGTTTCTCACAGTTTTTCTGAAGAGAATATGGTTGTGAAACTCAGTTTGTGGCTTATGGATATCCAG TACACTGAGCTGGGCTCTACAGCACATGTCAGCACAGTTATTGCTACATTACGGTGCCTTTCTAGAGCTCCCAGGTTGCCAAATTTGGATTGGGGAGCAA TTATTAGGCGTTGTATGAGGCATGAGGCTAATTGTGCTGAGTTACCGCCAACATATTCTGCTTTTAAGAAAGGGACCCTCAGGGAGGAATGCATACAGTT CGCATTAGCTCATGCTAGTCAATTTGATTCACTCCTAACTTTTCTTGATGAGCTATCAGACTTTTCCAGGTTCAAGACACTTGAATTAAATCTGCAGTCA TGTCTGCTAATTCATCTGGCAGACCTTGCAAAAGTATATTCAAGCTCTAGGCTTGAGAAACTATTTGGAGATGTGACTAATCACTTGTCTTCATTTACTT CCTACGACGAGTCGAAAAGCTTGTTATGTATCTCATGCTGGAAAGGTCTCTATGAGTGCCTACATGAAGTTTCTGTGGACACTTCTGATCACATATCCCA TGTTGAGAGGTGCATGCAGGCTCTATTTACTTTATTACCAGTTACGCAATCTTCTGGCGTTGTAGTGTCAGGGGATGTAAGTTCTGTAGAGGAGTGGTCT GAGGCTCTAAAATGCTTAGGAAAGGCTCGTCAGAGTTGGTTATTGGATTTCCTAAAGGTTTCACATTACGAGTTTGGTCAAAGTGCTGACGATGCTGTTG AAATACAAAAAAAGGTTTGTGCTAAAATCAAGCTGGTGAAGGCTGGTTCTCTTCCTCTAATTGAACTCGGAAAAATGAAATCATACATATTAAACTCCAA ATCACAAGGACTTTGGGATGTACTGGTTGAAGTTGTTGCAGCTTTGCATCATGCAGAGGGAAGTGTCAAAAGACAGTGGCTTATGGATGCAGTTGAAATT AGCTGTGTATCCGCTGTTCCTTCCACGGCACTGCAGTTTCTCGGTCTTCTATCTGCTACCTGCTGCAAATATATGCCTTTTATGATAGTGGACCAACAGA CCGTACTGAATGATCTTCCGGTCACTCTTGTGTCTCTTCTAGAAGACAAAAACTGGGATAATGTTGCAGAAACTATTGTTTCCCTTCTCTTTTCATCGAC AGAACGGATATACCACTGGGTTATGCAACTAGCAGATGGTTCTTATGTTCCTGACTCACAGCCCATTGATGAAAGTGAGAATCATATGGCTCCTTTTTTG CTGCAGGTATTGCATCACACTTGTGTTTTGTTAAAAAGCTTCTTGCCATTAGATAAGCAGCTCAAGCTTGGTAGCATGGTTATAGTTTGAGATGGCAACT ACTTTCCTGAGGAAGTGTCGGAAAACATGGTTGTGGCCACGGCCGAAGAACTTGAGTATTGTTAAATTGATAGAATGAAAGAATTGGTTTCAATGAGTTT AAATGAAGCTTTATATATACTGACTATCCTGTAACCAATATTTAATTTACTGTAACAAGATGCATATAGGATTATGATGAAACCAAAACCACAAATTTGT TGTCATATATCATATTTTCAAAGGAACAGGAAGAACTTGTAACATGTATCATTCACTAGAATGCATGTTGTGTCATTTTATTTTCTTCCTACATAGGCCT GGTGCACATATTTGCATGTCTAGCCATTTTTGGTCTTGTGGGAATGTCATATATCATTCACCATTGAATGTCTTGACCATACCCCACAATTGAAAGCTGA AGGCTCTAGTATCCTAAGCTTTCTTTGAATGGAAAAACAGGTGAGAAATAGTTTCATATTTTGGATCCTCCAGCATGCCCTTTATCCACTTTTTGACCTT TAGATCAAGAAATTTATGCACCAACCATTTAAGAGTTTTATATATTGTTATTGTATCA BLAST |
Tissue | pods |
Gene name | LI_gene_141598; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_393275
Blastp | Protein RST1 from Arabidopsis with 50.35% of identity |
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Blastx | Protein RST1 from Arabidopsis with 50.3% of identity |
Eggnog | Protein of unknown function (DUF3730)(ENOG410Z8CX) |
Kegg | Link to kegg annotations (AT3G27670) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019448328.1) |
Pfam | Protein of unknown function (DUF3730) (PF12530.7) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |