| Id Trinity | TRINITY_DN45979_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_392755 |
| Sequence | CTACTCATGACCTCCCCTTGATATCTATCACAGACGAATGATATTCCATGCTTCCACGTTTTTGCACAGTGGTCCTTTCTCATCAATACACAAATATATA AAAAAAGAATACATAATAAACGACATTAAAAAAAGAGACGTAGAAGAAAAAAACGAATAAACCCAAATTCGCATCATCTTCTAGATCTGCTATCTCTTCG TTTCTTCCATATCCTTTCAATTTCAATATCAATCCTCCTTCTTCTCCATCTCCAAAGTGGAATCCCTCTTCACAGGTTGTGAATTGAATGGAAGGAACTG GAGGTAGCAGTGCCTCAGCTGCTGCACCCGTGAACCAATGGTTGCTGGAATTTTCGAGGCGATTTCAGCATTATCTTGATAAATCAACCCCACACTCTAC GTATAGATGGATCGGGACTGTTGGTATTGCGTCAATCTATGTTTTGAGGGTTTTTTATTTACAGGGATTTTACATCGTGTCTTATGGTCTGGGAATCTAT TTGCTGAACCTGTTGATTGGGTTTCTGTCACCTTTGGTTGATCCCGAGCTGGAGCCTTCTGATGGGCCTACGCTGCCAACTAAAGGTTCTGACGAGTTCA AACCATTCATTCGCCGGCTTCCTGAGTTCAAATTTTGGTAATTTAGGAATTTAGTTTTATGCCTAATGCATTATCATAATTGCTTCAAAGTCTTCCTTTG TCATTTTAAGTTCCTTTTATTTTTTCTAGAAAACTTTGATTAAATTTGTAATTCATGTTTATATTTGGTGCTCCAATGCTTGTTGTCTAGGCACTCACCT TTTTCGTGATTTGACTTGTAGTAACTTGTCTATGGTAATCTGTCATACCATGTATGACTCTGATTTCTGAATTCCAGCTGGTAGTATAAGTTTGCACACC TAAGATCTAATAGCCATCTAGTAAGTTTCCCAAATTTTCCATTTACTTTTCAAGAAAGCATTTGATTGATCATTGGAAAATAACTCCTACCTTCAGAAAG ATGGAAATATTAACTTGCTATTTCTTGCTCCCAGCTGCCATAGCCTGTCACTTCAGCTAATTGTTATCGGCTTCTGGCTTCCGGAGCCTGTTGGTCATTG CACATAGCAAAAGATGTTAAGATGTTTACTTGGAAATGCTTCTTTTTATTTTTTTATTTCAAAGTTCCTTAAAATATAAGCCTCACTGATGGCTATATTT TCCTGAAACATAAACATCCAGATCAAATTATTTGGCCTTAATTGTCTGCACATAAGAAGCACAGAGGCTTTACAGTGGTTGCTGGGTTGTATCCATGTCA AACACATCTGTATCTGACACTCCCGCCTATACTTTTACGATGTTTTATATCTACTTTTTGGATATTATACCATTATAGATCGGAATGTCACAATGATTAG CTAAAGATTAGCATTTTATTTTGTTTACAATGGCTCTTGCTAAGTTTTCTAACTTTAGTTTTTTTACTTTAGATTCATGCTTTCATGTTAATCTTATATC AATTTTATATCTTGTACCATAGTCGCGATAACATTTGAAATACGTCATAGCCCCATGTTCCTGATGTGTTGGGTCCATGTAACATGTTGTTCCTTGCTTT CATTTCCCTGGCAAATTTCATGTTTTCACAAAACCATGGTTTTAAGAATGCAAGTCACTAAAAGTTATGGCCAGCCTCTATTTCACTGTTAATTTCATTG CTATTGTTGGTGCAGGTATTCTTTCACGAAGGCCTTATGCATAGCATTTGTGATGACTTTCTTTTCTGTATTTGATGTTCCTGTCTTCTGGCCTATATTA CTCTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGGCGCCAAATTGCACACATGATCAAATACAGATACATTCCATTCAACCTTGGAAAGCAGAAGT ATGGTGGCAAGAGATCTTCTGCAAGTAGCAGTGGCACCCGTGCAGACTGATACTCGTCCGATTAATGATTTGAAGCATACATATCTCGAAGTTAGGTTTT GTGAGCATTCAGGGTAGTGCAATTTCCCCCTTTATTTGAAGGAATTTGTAGTCGGAGTATTATGAATGCCTTATATGCAGTTACAGAAAATCTTGGTGTG TCCACTAGTTATTTGAAACCAGAAGACATGCAAATATTGGCAGTGAACTTTTTTATGGTCATATACATCAGTATTTGTTTCAGTTTTAGATTTTATTGCA AATGTATTCTTGTATTGTTATGCTGTATTTTTTCCCTGCCTGGTATTTTATACTATTTTGAATGCAAACTTTTACCAGCGTCTTCTTTTGTTTAGAAAAT CATACTGATAAGGATGTGATGGACTGTTAAAATTGTCACTTGATGTGTGTTTTTCTCTCACTCAAAAGTAACTTCAATTTTGGGCACACAGCTTATTCTG ATGCAGCCCAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_141665; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_392755
| Blastp | Protein RER1B from Arabidopsis with 73.5% of identity |
|---|---|
| Blastx | Protein RER1B from Arabidopsis with 80.77% of identity |
| Eggnog | RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)(COG5249) |
| Kegg | Link to kegg annotations (AT2G21600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413892.1) |
| Pfam | Rer1 family (PF03248.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |