Ll_transcript_418542

• Id Trinity: TRINITY_DN46001_c0_g1_i1
• Name Transcript: Ll_transcript_418542
• Sequence: GGAAATGTGACATAGCCGCTGTTGAGGATGGAAGGTTGATGTCTGATTCTGATACTGGAGAATTCTGGGGTTTCTTTGGAGGCTTTGCTCCTCTTCCACG GAAAACAGTCAATGATGACGATAAGCCTGCTGATTCTCATCCTCCAAAGCTGATGTGTGTTGTAGCGGGGAAGGCTGAACCTATTGAGGCTGATTCATTG ACAAGGGAATTACTGGACACAGATAAATGCTATATTATAGATTGTGGGCTGGAATTGTTTGCATGGATGGGAAGAAACTCCTCTCTAGATGAAAGAAAAA GTGCTAGTGGTGCTGCAGAGGAGTTAGTCAGTGGCACTGGCCGATCAAAATCGTACATAACTCGTGTGATTGAAGGATTTGAAACTGTGATGTTCAAGTC CAAGTTTGACTCTTGGCCTCAAACAACTAAAGTAGCACATTCTGAAGATGGTCGGAGCAAGGTAGCAGAACGTCTAAAACGTCAAGGATTGGACGTCAAG GGTCTCTTGAAAACTGAACCTGAAAAGGAAGAACCTGAAGCCTACATAGATTGCACAGGAAATTTGCGGGTTTGGCGAGTGAATGGTCAGGAAAAGGTTC TTCTTCCAGCCTCTGACCATTCGAAATTTTATAGTGGGGATTGCTACATCTTTCAGTATTCATATCCTGGAGAAGATAGGGAAGACCATCTTATAGGAAC ATGGATTGGAAATAATAGTGTTGAGGAAGACAGAGCTTCAGCTCTTTCAATGGCAGGCAAAATGGTTGAATCAATGAAGTTTATTCCTTGCCTGGCTCGT ATTTATGAAGGCAGTGAACCAATTCAATTTCATTATATTCTCCAAAGCTTCATTGTCTATAAGGGTGGACTTAGTGATGGATACAAGAATTACATCGCGG AAAAGGAAATACCAGATGAGACATACAATGAGGAAGGCGTTGCATTATTCCGCATCCAAGGCTCTGGACCCGAAAATATGCAAGCCATACAAACTGAACC AGTTGCTTCCTCCTTGAATTCTGCTTACTGCTACATACTACATGATGGGCCTACTGTCTTTTCTTGGTCGGGAAGTTTTACAACTGCAGATGACCAGGAA CTTGTGGAGAGAATGTTGGATTTGATAAAGCCGGATTTACAATGCAAACTACAAAAGGAAGGTACAGAATCTGAAAAGTTTTGGGAGATATTAGGAGGAA AAACAGAATATTCCAGTAAAAAGATTGTGAAGGATGCTGAAAATGATCCTCACCTATTTTCTTGCAACTTCTCAAAAGAAGAACTAAAGGTGAAAGAGAT ATACAACTTTTCCCAGGATGATTTGATGACTGAAGATATTTTCATCTTGGATATTCACTCAGAAATCTTTGTATGGATTGGCCAGCAGTTTGATCCCAAA AATAGATTGCAGGCTTTAACCATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCAAGAAAAAGTATCTTCTGTAGCTCCAATATATGTTGTCATGGAAG ACAGTGAACCACCTTTCTTCACCCGCTTCTTTAAATGGGAGCCAGCAAAATCTGCAATGCTGGGAAACTCATTTCAAAGGAAGCTTACAATTGTAAAAAA TGGTGGTACTACACCTTTGGAGAAACCGAAACGAAGAGCATCTGTATCTTCTGGGGGAAGATCTGGTAGTCTTCCAGAAAAATCTCAGCGTTCGCGCAGC GTGTCTGTTAATCCTGATCGTGCTCGTGTTAGGGGAAGATCTCCAGCCTTTACTGCACTAACAGCTAATTTTGAGAGTCCTAAAGATAGGAACCTTTCAA CTCCACCTCCAATGGTTGCAAAACTGTATCCAAAATCTAGGTCACCAGATTCAGTTAAACCGGCTCCTAAAGCTGCAGCCATAGCTCAGCTTACTTCTAC TTTTGAACAACCACCATCAGCGCGAGATAGTTTGATACCTCGGTCATTGAGAGCGAGTTCAGATGCCTCAAAATCAAGCACCAATAAAAATGAGCAGGAA GAAGAGTCCTTGAACAGCA
• Tissue: pods
• Gene name: LI_gene_141729;
• Additional information: details;

Expression of Ll_transcript_418542

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.5
• PS2: 0.5
• PS3: 0.3
• PW1: 0.3
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_418542

• Blastp: Villin-4 from Arabidopsis with 67.18% of identity
• Blastx: Villin-4 from Arabidopsis with 66.92% of identity
• Eggnog: capping protein (actin filament) gelsolin-like(ENOG410XR0A)
• Kegg: Link to kegg annotations (AT4G30160)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442412.1)
• Pfam: Gelsolin repeat (PF00626.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;