Ll_transcript_418890

• Id Trinity: TRINITY_DN46030_c0_g1_i6
• Name Transcript: Ll_transcript_418890
• Sequence: CTCTCTCTCTCTCTCTCTCTCTCACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACTCTCTCTCTCTCTGGTTCAATTCAA TCATGAAACGCTCCATCGATGACGTCACTAACACCTCTGCATCCAAGCCTGTCTTCCTCACCAAAGCCCAACGCGAAGAGTTAGCCCTTCAACGCCGCCA ACAACAAATCGCCGATCAGAAGCGCCGCCATGAAGACATCCTCTCCACCACAGATCCCAAACCCTCCTCCTCTGACCGCCGAGAACGGGAAAGGGACAGG GATAGGGACAGGGATAGGGATAGGGACAGGGACAGAGACAGGGATAGGGATAGAGAACGCGAACGTGAGCGAGAGCGGGAAAGAGAACGCGACAGGGCTC GCGACAGGGCTAGGGAAGATGAGCGAAGGAACCGAATGGAGAAATTGGCTGAGCGTGAGCGAGAGAAAGAGCTAGATGCGATAAAAGAACAGTACCTTGG TTCAAAGAAACCTAAAAAACGAGTCATCAAACCTAGCGAGAAGTTCCGTTTCTCATTCGATTGGGAAAACACCGAGGACACTTCCCGCGACATGAATGTC CTTTACCAGAACCCTCACGAGGCTCAACCCCTCTTTGGTCGTGGTTTTCGTGCTGGAATGGACCGCCGTGAGCAGAAGAAGCTCGCTGCCAAGAACGAGA AGGAGATGAGGGAGCAAATGCGGAAGAAGGATGGTATTGAGGAGAAGCCCGAGGAGGCTGATGCCCAACGCCGAAAGGAGGCTGCCGCTGATTTATATGA TACATTTGACATGAGAGTAGACCGTCATTGGAGCGAGAAGAAGCTTGATGAAATGACCGAGCGTGATTGGCGTATATTCAGGGAGGATTACAACATCTCC TACAAGGGTTCCAGAATTCCACGCCCTATGCGTAGCTGGATTGAGAGTAAGTTGAGCCTTGAGCTTCTGAAGGCCGTCGATAAGGCTGGTTACAAGACCC CTTCTCCAATTCAGATGGCTGCCATTCCTCTTGGCTTGCAGCAACGCGATGTTATTGGCATCGCTGAGACTGGTTCTGGGAAGACTGCTGCTTTTGTTCT TCCTATGTTGGCTTATATCAGTAAGCTTCCCCCCATGAGCGAGGAGATTGAGGCAGAGGGTCCATATGCTGTTGTTATGGCTCCCACACGTGAGCTAGCA CAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATTTGGGATTTAAAGTTGTTTCCATTGTTGGTGGGCAGTCCATCGAGGAGCAAGGGTTTAAGA TTAGGCAAGGTTGTGAGATTGTTATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAAAGGCGCTATTGTGTTCTAAACCAGTGCAATTATGTCGTTCT TGATGAGGCTGATCGCATGATTGATATGGGGTTTGAGCCCCAGGTCATGGGTGTCCTGGATGCTATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGAT GAAGAGCTCGATGAGAAGAAGATTTATAGGACCACATATATGTTCAGCGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACC CTGTTGTGGTAACCATAGGCACTGCTGGAAAGGCCACTGACTTGATCAGTCAGCATGTGATCATGGTGAAGGAATCTGAGAAATTTCATAAGCTTCAGAG GTTGCTGGATGAGCTTAATGACAAGACAGCAATTGTATTTGTTAACACCAAGAAGAATGCCGATATGGTTGCCAAGAATTTGGATAAGGATGGCTACCGT GTGACCACTTTGCATGGAGGGAAATCACAGGAGCAGAGGGAGATTAGTCTCGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTTGCAACGGATGTTG CTGGACGTGGGATTGACATACCCGATGTGGCTCATGTCATAAACTATGATATGCCTGGGAATATTGAAATGTACACACATCGTATTGGGCGTACTGGCCG TGCAGGAAAGACTGGTGTGGCTACAACATTCCTGACACTTCATGACACTGATGTCTTTTATGACTTGAAGCAGATGCTTACTCAAAGTAATAGTCCTGTT CCACCTGAATTGGCAAGGCACGAGGCTTCAAAATTCAAGCCAGGAAGTATTCCTGATAGACCTCCAAGAAGAAATGACACTGTGTTTGCACACTAGAGAA CTTTTATTGATTAGGTAGTTGCTTGTGGACTGCTTATTGTCTCTAGCAGCAATTGATAATATTGAAGCAGAACCTTTGATTAATTTTTGTCATTTGCCTT TAGCATTTATGCTACAATGGTTGTTATCTTTTCTGATAATGCTTATTATGGCTTTATCCAGGTTCACCAGGCTGTGCATAAATTTTCTAGGTCTGTTAGA TTATGTTTCTCCCACCTAGTTAGCCTAAGACTTGGTTGTTGTTGTTGGTTGTTAGATTATGTTTTTATATTGTTTGGCATTAACTGGCTTCTGAAATTTT AATGTTAGATTATGTTTTTATATTATAGAGTCTATATATATAACACCTTGTAGTAGGAGATACCTTAATGCTTAAAGCATGCCTTACTGAAGGAAAAGCA TTAACATAAGGTGTGGAAAACAGTTTTGACTATTTTGTATTTATATACTTTTTATTTAATCTTTTTAACATTCGGACTATCTTACCACGTTGGCATCACA TTTAGGTGCTACATGTCTGTTGAACCAGAGCCCAACTCCTAAGTTGCCAATAGTTGTTGTTGAGCCCTGGCACTGACCATTGTAGCACCTTTGCCCCTCA GGCAAGCCTTTTAGTTCAGCC
• Tissue: pods
• Gene name: LI_gene_141850;
• Additional information: details;

Expression of Ll_transcript_418890

FPKM

• PAB: 0
• PNAB: 1.5
• PS1: 3.5
• PS2: 0.5
• PS3: 0
• PW1: 0.8
• PW2: 1.1
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_418890

• Blastp: DEAD-box ATP-dependent RNA helicase 21 from Arabidopsis with 87.71% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 21 from Arabidopsis with 88.75% of identity
• Eggnog: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG)
• Kegg: Link to kegg annotations (AT2G33730)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463889.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;