Id Trinity | TRINITY_DN46040_c1_g1_i15 |
---|---|
Name Transcript | Ll_transcript_417457 |
Sequence | TTTTTTCTTTTTACATAAAAACATATTTTCCATCGATCACTCACATTTTGTCGTAAATCAGGTGCTTTTCTTGAGATGATAATGTAGTGTTACTCCTTCC CACGCACGCTTTGCGAACCTTTCCCTCATATATAAACCTCTTTCATTCAGAGGCAGAAAAAAAGGAAAGGCTTCTGTGTTCAATGGGAGAAAAAGGTGAA TGCTCTGGAGTCAAACCCTCTGATGATGAAATCTGGGCAAAACTTGTTCCGTCAGACTCGAGATATTCAGACGTCGAGATAAGGTCAGACGAAAAAGTAA TATGTTCAGAGATATCAGCTGCATTTGGTGACAAACATAGCTGGTGCAAAATAATAAGGAATTCTGATCTATGTTCTGCTACAGTAGAAAACAAGAGGTA AATTCATGATTACTTAATAGTGATCATTAAGTAATTGAGTAAATCACACTCCTTATTTTTCTCTCGAGATAAGTGTTTGTGATTTATTAGAAATGATTTT CGAGAGGAATTTAAAACTTATGCGATTTATGAGCCCTTCGCAGTTTGTTTCTCCTATCTATTATTGGACAAATATCCTTTAAAGTTGCAGTTGGAGCAGC TATACCTTATGTTTTACATTTTTCCATATACTCTCTCATGAGGATTGTTAGTAGGAACAATCATATAATGTATTCACTTCCCTGCTTTTCTAGGGTTGGA ATCACTATAACTTGTTTCAGCTTCTTGATGACGAAGGATTACCAAATACTTAGTAAATTCTCCTATTGAAATATTGAAAGTTTTATATATCTCCAGAAGA AGGGGATTGTCTTCTTTCCTATGCTTATTTGCCGTACTATTTCCCCTTTTTTGTTATTGAGTGTATTATCTATTTAAAATGTAGTCCGAATACAATACTT GTTGATGGGACTGAGGTGCACAATGAGAACACTGTTGTCATCAAGGATGGAAGTGAAATTATTCCAGGTCCTGATAAAGGGGGTTAGTCCGTTAGAATCT CTTTAATACTTATGCTAGTGTAACAATTTCTATTGCTGATGACATATATAGGGTAAAAAATTGTAAATTATGTTTTATATCTTCAGCTCTGCTGTTACAC TTCCATAAATAGTGATGCTGATGGTCTAATGCATTGGTTTGTCTAAAAATAGATACATTTAAAGTTTCTTTCGGTTGATTAACAGGTCATCATGTTTTCT TTAATAGGATTCAAACTTGGTTTGACAAAAGTGGTGAAATTGTTTGGGTGCAAAATAACGTTAGTATAGGTCATTATAGAGAAAATAGACTACCATATTG CCTTGGGAGGTAAATTGGCATATATTAGGGCATGTAATTTGTATCTGTTTTCTAATCTAAAAAATGTCCGAACAAGTGGGAATTACTTGTATCAATAGGT TTTTTTTCTTTCTGATTTCATATGGTTAAATTATACTTGGCAGTGTTAAGTTTCAACTTCTGGTTGGTTTTACATGATTTTCGGGTTTTCTGAATAATTA GTAAATGTCTTTATTGTAGAGTTAGAGTGTTAGATTGAGCCTGTATGCTAATTATTTGGCTTTTGATACTAATGTTTTAACATTTCCAAGCTAAATACAT CAATTCTATCTTTCTCTATTTTCATGCTGCTAGGATTTGTCAGCTACAGATTTGATATCTTGTCAAGCCCAGAAACCAGCCAGAGGCAGCTGCAGATCTG TGTTGATGTTGAGAATGCTAAGTGTAGCATTTGCTTAAACATATGGCATGATGTTGTGACTGTTGCTCCATGCCTTCATAATTTTTGCAATGGTTGCTTC TCAGAGTGGTTAAGGAGATCACAAGAAAAACGTTCAAGTGTACTTTGTCCTCAATGCAGAGGAGTTGTTCAATTTGTTGGAAAAAACCACTTTCTGCGTA CCATTGCAGAGGATATGCTAAAAGCTGATTCTTCCTTAAGACGCTCAGATGAAGAAGTTGCACTCTTAGATACTTATTCATCCGTACGATCAAACCTTGT CATTGGATCTGGAAAGAAGAATTGTCGAAAGAGAGCTCACACCCCAGTGGATGATCAAAGTGATGGCACATACCTTCAGTGTCCACAATGTGTTCATGAA GTTGGTGGGTTTCATTGCAATAATAACACTGTTCATCTCCAATGTCAAGCATGTGGAGGAATGATGCCATCCCGGCTTGGTTTTAACATTCCTCAATATT GTTCAGGATGTGATAGATCATTTTGTGGAGCTTACTGGCATGCTTTAGGGGTAACGGGCAGTGGTCCTTACCCTATTTGCTCCCAGGATACTTTAAAACC TATCTCAGAACACTCTATCTCAAGAATCCCTTTGTTAGCACATGAAAATAATGTGCATGAACAGAATGTATGTGCTTTCTGATCCCCTTATTTTATCATT TTTTGTCTGTTTTAGCTTATCATTTTTACGGTCGTTATCATTTATGATTTTCTAGATCACTGATAGTTGCATTAGACAAATGGGGAAGACATTACAAGAT GTTGTATCAGAGTGGATAGTAAAGCTGAACAACAAAGAAATTGGTAAAGTGATAAATTTGTGTGCCCTGTAGTGCTTAATGAGAATTATTCTTCTGGGTT TTTCAGATTCCTGTTTCACATTTGCATACCATTCACAAAGAAATTTTTCAATAAAGTGGTAGCTTTTGTATAATATTCTTATAAACCGTTATACATTGTT GCAAAGATTGATGTGATGTACACCTGAGAGCTCGACTATTCATACATAGGTTTCCTTGTCTCATTTTTCTGTTGGTGACTGCTTTTTATTTTTACACGCT TATCTCTCGTTTATCATGAGGTTTATGCTTTTGTTATACGCCATTGATCATGTTTTTCTCTTAGCAGATGTAACACGTTTGGCGTTGAATCACGTTGAGA CGATTAATGCTAGGACTTCTGTATGCTGGTAACCCTTTGTCCTGAATCATTGAAAGCTAAAGTGGAATTATCTAAATATTGTAACAGGTCCCATATCTCA GACATGTTGCATACTGCTCAACACTGAAAATAGTGTCATACTGGATAATAGTTTATCTTATGTCTCTCTATATTAGATTAACATTGTGCTGGATCATTG BLAST |
Tissue | pods |
Gene name | LI_gene_141918; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_417457
Blastp | E3 ubiquitin-protein ligase CHFR from Pongo with 25.32% of identity |
---|---|
Blastx | E3 ubiquitin-protein ligase CHFR from Pongo with 25.32% of identity |
Eggnog | zinc ion binding(COG5243) |
Kegg | Link to kegg annotations (100171543) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019458160.1) |
Pfam | Ring finger domain (PF13639.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |